miRBase entry: atr-MIR8579

Stem-loop atr-MIR8579


Accession
MI0027464
Description
Amborella trichopoda atr-MIR8579 precursor miRNA


Sequence

725 reads, 1582 reads per million, 4 experiments
ccuucuuacacggggcaucaucaccucuaauacuggcaagauguuuauugaaucuauuuuuaguggcauuagaaauauguccacaaaauuugcacaugauuuuguuuuugucauucuugaccgaguuaacacaauacuuccauccuaaaguuuuggaaaaaaaaguuuaggaagcuucuucgaacucagauacgaaugagaaaaauaaauuaugugcaauuuuuguggacauaugccuaaugucggcauaaauugaacaucuucucgguuuuagugGUGAUGUAGCCCCGUUUAAGAAGG
((((((((.(((((((..(((((((.((((.(((((.((((((((((........((((....(((((((((..((((((((((((((.(((((((((((((.((((((.((((((.((.(.(((((.........((....(((((((.((((......)))).)))))))))........))))).).)).)))))).))))))))))))))))))).))))))))))))))..)))))))))....)))))))))))))).))))).)))).)))))))..))))))).))))))))

Structure
        c       au       u    u     c          uugaaucu    uuag         aa              u             u      g      u  a c     aacacaaua  ucca       g    gg 
ccuucuua acggggc  caucacc cuaa acugg aagauguuua        auuu    uggcauuag  auauguccacaaaa uugcacaugauuu guuuuu ucauuc ug c gaguu         cu    uccuaaa uuuu  a
|||||||| |||||||  ||||||| |||| ||||| ||||||||||        ||||    |||||||||  |||||||||||||| ||||||||||||| |||||| |||||| || | |||||         ||    ||||||| ||||   
GGAAGAAU UGCCCCG  GUAGUGg gauu uggcu uucuacaagu        uaaa    gcuguaauc  uauacagguguuuu aacguguauuaaa uaaaaa aguaag au g cucaa         ga    aggauuu aaaa  a
        U       AU       u    u     c          --------    uacg         cg              u             -      g      c  a a     -gcuucuuc  ----       g    aa 


Annotation confidence Not enough data
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Genome context
scaffold00036: 4709046-4709345 [+]

Database links

Mature atr-miR8579

Accession MIMAT0033863
Description Amborella trichopoda atr-miR8579 mature miRNA
Sequence 277 - GUGAUGUAGCCCCGUUUAAGAAGG - 300
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089