Stem-loop atr-MIR8580

Accession

MI0027465

Description

Amborella trichopoda atr-MIR8580 precursor miRNA

Sequence

111 reads, 72 reads per million, 2 experiments

uggaaaugagguugcgauauucuucaccauccauuuuacuuggacuguguagguuugaaucguuuuuuaagaccguuucaauggaugucacgucuuuuaagauaguguucaaucuacacUGUCUAAAUAGAAUGGAUGGUGUAggugacugcaaccuuauuucua
((((((((((((((((....(((.((((((((((((((.((((((.(((((((((.((((.(((((..(((((.((..((.....))..)))))))..)))))...))))))))))))).)))))).)))))))))))))).)))....))))))))))))))))

Structure

                auau   u              c      u         u    --c     uu     c  uu  a 
uggaaaugagguugcg    ucu caccauccauuuua uuggac guguagguu gaau   guuuu  aagac gu  ca u
||||||||||||||||    ||| |||||||||||||| |||||| ||||||||| ||||   |||||  ||||| ||  || g
aucuuuauuccaacgu    ggA GUGGUAGGUAAGAU AAUCUG cacaucuaa cuug   uagaa  uucug ca  gu g
                cagu   U              A      U         -    uga     uu     -  cu  a 

Annotation confidence High

Genome context

scaffold00003: 1980853-1981017 [-]

Mature atr-miR8580

• Accession: MIMAT0033864
• Description: Amborella trichopoda atr-miR8580 mature miRNA
• Sequence: 120 - UGUCUAAAUAGAAUGGAUGGUGUA - 143
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089