Stem-loop atr-MIR8552c

Accession

MI0027467

Description

Amborella trichopoda atr-MIR8552c precursor miRNA

Sequence

1554 reads, 1402.0 reads per million, 2 experiments

acccauggguugacugcuacaguaaaugcccacggcccagAUUGAAUCUGAGCCGAUCUGauggucacgaucucauuucacauuugaauuuucauuuuuuuucuacagauccaaaucacuugaaauuugggugucuauucuucaaaaaucauagaaucuaauaaaaauacaaaaaaaauaauucguaaaauauaaauuaagucaauuuauauuuuacuaguuauuuuuuuuauauauuauuuggugcgccuugaugagaagaaugaacgucccaaauuucaagugauuuggauuuguugaaaaaaaaacguaaaauucaacuacgaaaugaGGCCGUGAUCGUCAAAUUGGCUCAuauucaauuuaggccaugagcguuaauguagcagucagcccgucggu
(((.(((((((((((((((((...(((((.((.((((.(((((((((.(((((((((.(((((((((((.(((((((((....((((((((((.(((((((((.((((((((((((((((((((((((((((((.((((((((....((((..(.(((.(((((..(((.(((((((((((((.((((((((((((((.....)))))))))))))).))))))))))))).))).))))).))).)....))))..)))))))).))).))))))))))))))))))))))))))).)))))))))..).)))))))))....))))))))).))))))))))).))))))))).))))))))).)))).)).)))))..))))))))))))))))).)))

Structure

   c                 gua     c  c    c         C         C           a         acau         - -a         u                           -   c        aaaa    --ua a   u     aa   c             c              a 
acc auggguugacugcuaca   aaugc ca ggcc agAUUGAAU UGAGCCGAU UGauggucacg ucucauuuc    uugaauuuu c  uuuuuuuuc acagauccaaaucacuugaaauuuggg ugu uauucuuc    auca    g auc aauaa  aua aaaaaaaauaauu guaaaauauaaauu a
||| |||||||||||||||||   ||||| || |||| ||||||||| ||||||||| ||||||||||| |||||||||    ||||||||| |  ||||||||| ||||||||||||||||||||||||||| ||| ||||||||    ||||    | ||| |||||  ||| ||||||||||||| |||||||||||||| g
ugg ugcccgacugacgaugu   uugcg gu ccgg uuuaacuua ACUCGGUUA ACUGCUAGUGC GGaguaaag    aacuuaaaa g  aaaaaaaag uguuuagguuuagugaacuuuaaaccc gca guaagaag    uagu    c ugg uuauu  uau uuuuuuuuauuga cauuuuauauuuaa u
   c                 -aa     a  a    a         u         A           C         cauc         u ca         u                           u   a        --ag    uccg g   u     -a   a             u              c 

Annotation confidence Low

Genome context

scaffold00038: 2385712-2386113 [-]

Mature atr-miR8552c-5p

• Accession: MIMAT0058663
• Description: Amborella trichopoda atr-miR8552c-5p mature miRNA
• Sequence: 41 - AUUGAAUCUGAGCCGAUCUG - 60
• Evidence: experimental ; unknown

Mature atr-miR8552c-3p

• Accession: MIMAT0033866
• Description: Amborella trichopoda atr-miR8552c-3p mature miRNA
• Sequence: 332 - GGCCGUGAUCGUCAAAUUGGCUCA - 355
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089