Stem-loop atr-MIR8582

Accession

MI0027468

Description

Amborella trichopoda atr-MIR8582 precursor miRNA

Sequence

301 reads, 200 reads per million, 2 experiments

agcgagcuuucucugcaaguuaugugaugaacuccuacuacaggagcgauuuuuaucugaaacgugacuuugaucaaagccccgaauauagUAGGAGUCAUGACGUAGCUUGcagaaagacauccucacu
((.(((...((((((((((((((((.((((.(((((((((..((.((((((....((........))....))))...)).)).....))))))))))))).))))))))))))))..))....))).))

Structure

  c   -cuu  --              g    a         ---ca  a  ---    uuua  uga 
ag gag    uc  ucugcaaguuaugu auga cuccuacua     gg gc   gauu    uc   a
|| |||    ||  |||||||||||||| |||| |||||||||     || ||   ||||    ||    
uc cuc    ag  agacGUUCGAUGCA UACU GAGGAUgau     cc cg   cuag    ag   a
  a   cuac  aa              G    -         auaag  c  aaa    uuuc  ugc 

Annotation confidence High

Genome context

scaffold00039: 1732374-1732503 [+]

Mature atr-miR8582

• Accession: MIMAT0033867
• Description: Amborella trichopoda atr-miR8582 mature miRNA
• Sequence: 92 - UAGGAGUCAUGACGUAGCUUG - 112
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089