miRBase entry: atr-MIR8583

Stem-loop atr-MIR8583


Accession
MI0027469
Description
Amborella trichopoda atr-MIR8583 precursor miRNA


Sequence

1511 reads, 1210.0 reads per million, 2 experiments
aggucaaggugguaGCACCACUUGUGACUUAGCUACUGgacuagguuuccauucuuaucaaugccuaacccauaauuaguggucauaagugggaauggaaaccuagaccgguagcugagacuguauuccuaccccauaauuaguagucaucagugggaaaccuaguccaGUAGCUGAGGCUCAAGUGGUacuacuaccaugacuuuaauccccuuauuaaaacuaccccauaauuaguagucaucagugggaaaccuaguccaguagcugaggcucaagugguacuacuaccaugacuu
.(((((.((((((((.((((((((.(.(((((((((((((((((((((((((((((((..(((((...............)).)))..))))))))))).(((......))).((((.(((((..(((((((....................)))))))...)))))))))...(((((.(((..(((((....))))))))))))).((((((.......(((((..........)))))....)).)))))))))))))))))))))))).).)))))))).)))))))).))))).

Structure
a     a        C        U A                    uccauucuuaucaaugccuaacccauaauuaguggucauaagugggaauggaaaccuagaccgguagcugagacuguauuccuaccccauaauuaguagucaucagugggaaaccuaguccaGUAGC     C   AG     c 
 gguca ggugguaG ACCACUUG G CUUAGCUACUGgacuagguu                                                                                                                               UGAGG UCA  UGGUa u
 ||||| |||||||| |||||||| | ||||||||||||||||||||                                                                                                                               ||||| |||  |||||  
 ucagu ccaucauc uggugaac c gagucgaugaccugauccaa                                                                                                                               auuuc agu  accau a
u     a        a        u g                    ----------------------------------------------------------------------------------agggugacuacugaugauuaauaccccaucaaaauuauuccccua     -   --     c 


Annotation confidence Low
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Genome context
scaffold00039: 3157489-3157787 [-]

Database links

Mature atr-miR8583-5p

Accession MIMAT0033868
Description Amborella trichopoda atr-miR8583-5p mature miRNA
Sequence 15 - GCACCACUUGUGACUUAGCUACUG - 38
Evidence experimental
Illumina [1]

Mature atr-miR8583-3p

Accession MIMAT0058664
Description Amborella trichopoda atr-miR8583-3p mature miRNA
Sequence 170 - GUAGCUGAGGCUCAAGUGGU - 189
Evidence experimental
unknown

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089