miRBase entry: atr-MIR8616

Stem-loop atr-MIR8616


Accession
MI0027474
Description
Amborella trichopoda atr-MIR8616 precursor miRNA


Sequence

1045 reads, 1602 reads per million, 4 experiments
agcccuaucaaaguaaguaaagccucacccuaaaacuaaccgaaaauugcacuugugacguuugaaaaccuucaaauugaucaucucggccuugaacauuauaguugugaaaaaaauuucggauuucaagcucuaaaaauaguguauauuacacauuauuuagaucguccauuucacccuaaaaauaaguauucauggauccguaagaucuauauuuuuuuaagcuucaaauuucauagucgguguuggaaauugauuuuagagccaucauggagauuuucgaugcccaaaaugcucucugaaugaggauucgagaugaggcuuuacuuugauuucuuagaggcccgggccuuauaaaaucgaaagugcaauccgaaugaggauucgagauaaggcuuuauuuugauuucauagaggcccaggccuuauaaaacauaaaguagagauucaccucaaagccuuaucugaaaaacacuucaggcauaagaaaucuuuuugauggcuuuaaaaucuauuuccaUCAUCGAUUAUAAAAUUUGUAGCUcaaaaaaugguacagaucuugcaaauuugugaaaauuuagaaauagauggucuagaugauguguuacaagauacauuauuuuuaggacuugaaauuuuauuuuuuuuaacaacuguaauagugaaggucaugaugauuuauuugaaguuuuuuugacacugaaaguagaauuuuuuuuguaaguuuugaggcgaagcauuaguuuuucucauaaggcu
((((.(((......((.(((.((.((.((.(((((((.((.(((((((..((((.....(((.(((((.((((((((.(((((((..((((((.(..((((((((((((((((((((...((((((((((.((((((((((((((((...(((((((((((((((((((.(((((..........(((((.(((((((((..(((((((((.(((((((((.((((.(((((((.((((((((((.(((((((.((((((((((((((((.(((((((((..(((((...(((.(((.......))).)))..((((((((((((((((((........((((((.(((((((((.(((((((((..((.((((((((....))))).)))...))....))))))))).)).))))))).))))))........)))))))(((......))).)))))))))))(((......))).)))))..))))))))).)))))))))))))))).))))))).)))))))))).))))))).)))).))))))..))).)))))))))..))))))))).)))))))))).)))))))))))))))))))......)))))))))))))))).)))))))))).))))))))).)))))))))))..).))))))..))))))).)))))))).))))).))).....))))..)))))))...)).))))))).)).)).)).))).))......))).))))

Structure
    c   caaagu  g   a  c  a  c       a  --c       gc    gugac   u     c        u       uc      g ac           -         uuc          c                ---auu                   c     acccuaaaaa     a         cc         a   --      a    u       c          u       u                u         cg     caaaaugcucucugaaugaggauucg           -------------       auuucuua      c       -  a         --gu  --a   -     g 
agcc uau      aa uaa gc uc cc uaaaacu ac   gaaaauu  acuu     guu gaaaa cuucaaau gaucauc  ggccuu a  auuauaguugu gaaaaaaau   ggauuucaag ucuaaaaauaguguau      acacauuauuuagaucguc auuuc          uaagu uucauggau  guaagaucu uau  uuuuuu agcu caaauuu auagucggug uggaaau gauuuuagagccauca ggagauuuu  augcc                          agaugaggcuu             uacuuug        gaggcc gggccuu au aaaucgaaa    gc   auc cgaau a
|||| |||      || ||| || || || ||||||| ||   |||||||  ||||     ||| ||||| |||||||| |||||||  |||||| |  ||||||||||| |||||||||   |||||||||| ||||||||||||||||      ||||||||||||||||||| |||||          ||||| |||||||||  ||||||||| |||  |||||| |||| ||||||| |||||||||| ||||||| |||||||||||||||| |||||||||  |||||                          |||||||||||             |||||||        |||||| ||||||| || |||||||||    ||   ||| |||||  
ucgg aua      uu auu cg ag gg guuuuga ug   uuuuuaa  ugaa     cag uuuuu gaaguuua uuaguag  cuggaa u  uaaugucaaca uuuuuuuua   uuuaaaguuc ggauuuuuauuacaua      uguguaguagaucugguag uaaag          auuua aaguguuua  cguucuaga aug  aaaaaa UCGA GUUUAAA UAUUAGCUAC accuuua cuaaaauuucgguagu uuucuaaag  uacgg                          ucuauuccgaa             augaaau        uuccgg cccggag ua uuuaguuuu    cg   uag gcuua g
    a   cucuuu  g   a  a  c  a       a  uuu       ga    aguca   u     u        u       ua      g ga           a         --u          a                gaacau                   a     ----------     a         aa         c   gu      c    U       A          U       u                u         aa     -------------acuucacaaaaag           acuccacuuagag       acaaaaua      a       a  c         auuu  gaa   a     g 


Annotation confidence Not enough data
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Genome context
scaffold00049: 1238277-1239038 [+]

Database links

Mature atr-miR8616

Accession MIMAT0033873
Description Amborella trichopoda atr-miR8616 mature miRNA
Sequence 521 - UCAUCGAUUAUAAAAUUUGUAGCU - 544
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089