Accession
MI0027475
Description
Amborella trichopoda
atr-MIR8587 precursor miRNA
Sequence
2909
reads,
2281.0
reads per million, 2 experiments
aaaaaaaaagcauuuuggcaguuugaaaguccAACUUUUGAACUGCCCAAAAUACAaaaaacuaauuuguuuguguaguuugaaaauccaaucuuucgaauauuccaaaacacauacaaaaauaaaaaaagaaaacgucaaguguuuggccguucgaaaguuggacuuuugaacugcccaaauacuuuuuuuucuuuuuguguuuuggaugguucgaaaguuggacuuuugaaccgcccaaacacauuuuuuuuuuguauUUUGGGCGGUUUCAAAGUUggucuuuugaaaccccaaaugcuuaauuuuu
.......((((((((.((...((((((((.((((((((.((((((((((((((((((((((..(((.((((((.((.((((((((.(((((.(((((((((..(((((((((((............(((((((((....(((((((((((.((((((((((...)))))))))).).))))))))))..))))))))))))))))))))..)))))))))))))).)))))))).)).)))))).)))..)))))))))))))))))))))).)))))))).))))))))...)))))))))).......
.......((((((((.((...((((((((.((((((((.((((((((((((((((((((((..(((.((((((.((.((((((((.(((((.(((((((((..(((((((((((............(((((((((....(((((((((((.((((((((((...)))))))))).).))))))))))..))))))))))))))))))))..)))))))))))))).)))))))).)).)))))).)))..)))))))))))))))))))))).)))))))).))))))))...)))))))))).......
Structure
aaaaaaa u cag u U cu u u a a u au uacaaaaauaaa cguc - c u
aagcauuu gg uuugaaag ccAACUUU GAACUGCCCAAAAUACAaaaaa aau uguuug gu guuugaaa uccaa cuuucgaau uccaaaacaca aaaagaaaa aaguguuugg c guucgaaagu
|||||||| || |||||||| |||||||| |||||||||||||||||||||| ||| |||||| || |||||||| ||||| ||||||||| ||||||||||| ||||||||| |||||||||| | |||||||||| g
uucguaaa cc aaguuuuc ggUUGAAA UUUGGCGGGUUUuauguuuuuu uua acaaac cg caaguuuu agguu gaaagcuug agguuuugugu uuuucuuuu uucauaaacc g caaguuuuca
uuuuuaa - cca u C uu c c c c - gu ------------ --uu c u g
Annotation confidence
High
Do you think this miRNA is real?
Genome context
scaffold00049: 2701457-2701766 [-]
Database links
Mature atr-miR8587-5p
| Accession | MIMAT0033874 |
| Description | Amborella trichopoda atr-miR8587-5p mature miRNA |
| Sequence | 33 - AACUUUUGAACUGCCCAAAAUACA - 56 |
| Evidence |
experimental
Illumina [1] |
Mature atr-miR8599-5p
| Accession | MIMAT0033888 |
| Description | Amborella trichopoda atr-miR8599-5p mature miRNA |
| Sequence | 261 - UUUGGGCGGUUUCAAAGUU - 279 |
| Evidence |
experimental
Illumina [1] |
Mature atr-miR8587-3p
| Accession | MIMAT0061213 |
| Description | Amborella trichopoda atr-miR8587-3p mature miRNA |
| Sequence | 261 - UUUGGGCGGUUUCAAAGUU - 279 |
| Evidence |
experimental
unknown |
References
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