Accession
MI0027475
Description
Amborella trichopoda
atr-MIR8587 precursor miRNA
Sequence
2790
reads,
2156
reads per million, 4 experiments
aaaaaaaaagcauuuuggcaguuugaaagUCCAACUUUUGAACUGCCCAAAAUacaaaaaacuaauuuguuuguguaguuugaaaauccaaucuuucgaauauuccaaaacacauacaaaaauaaaaaaagaaaacgucaaguguuuggccguucgaaaguuggacuuuugaacugcccaaauacuuuuuuuucuuuuuguguuuuggaugguucgaaaguuggacuuuugaaccgcccaaacacauuuuuuuuuuguauuuugggcgguuucaaaguuggucuuuugaaaccccaaaugcuuaauuuuu
.......((((((((.((...((((((((.((((((((.((((((((((((((((((((((..(((.((((((.((.((((((((.(((((.(((((((((..(((((((((((............(((((((((....(((((((((((.((((((((((...)))))))))).).))))))))))..))))))))))))))))))))..)))))))))))))).)))))))).)).)))))).)))..)))))))))))))))))))))).)))))))).))))))))...)))))))))).......
.......((((((((.((...((((((((.((((((((.((((((((((((((((((((((..(((.((((((.((.((((((((.(((((.(((((((((..(((((((((((............(((((((((....(((((((((((.((((((((((...)))))))))).).))))))))))..))))))))))))))))))))..)))))))))))))).)))))))).)).)))))).)))..)))))))))))))))))))))).)))))))).))))))))...)))))))))).......
Structure
aaaaaaa u cag U U cu u u a a u au uacaaaaauaaa cguc - c u
aagcauuu gg uuugaaag CCAACUUU GAACUGCCCAAAAUacaaaaaa aau uguuug gu guuugaaa uccaa cuuucgaau uccaaaacaca aaaagaaaa aaguguuugg c guucgaaagu
|||||||| || |||||||| |||||||| |||||||||||||||||||||| ||| |||||| || |||||||| ||||| ||||||||| ||||||||||| ||||||||| |||||||||| | |||||||||| g
uucguaaa cc aaguuuuc gguugaaa uuuggcggguuuuauguuuuuu uua acaaac cg caaguuuu agguu gaaagcuug agguuuugugu uuuucuuuu uucauaaacc g caaguuuuca
uuuuuaa - cca u c uu c c c c - gu ------------ --uu c u g
Annotation confidence
High
Do you think this miRNA is real?
Genome context
scaffold00049: 2701457-2701766 [-]
Database links
Mature atr-miR8587
| Accession | MIMAT0033874 |
| Description | Amborella trichopoda atr-miR8587 mature miRNA |
| Sequence | 30 - UCCAACUUUUGAACUGCCCAAAAU - 53 |
| Evidence |
experimental
Illumina [1] |
References
|
