Accession
MI0027476
Description
Amborella trichopoda
atr-MIR8588 precursor miRNA
Sequence
3635
reads,
3906.0
reads per million, 2 experiments
uuacuccaggaaacgaaggguuacuggaauuuugaugggaagagaugaaaaacaCCGAGCUCCCAGGGUUAAUGGcggucucgugagacuaggggucacagagauuaggcuuuaccagaacaacugagaacucaaaagauaagauuaaucuacaucgccugaucucugcgaccacuuccauuaauccugggaguUUGGUGUUUUUCAUCUCUUCCcaauaaaaguccaacauugguaucggaguga
(((((((..((.((.((..((...((((.(((((.((((((((((((((((((((((((((((((((((((((((.(((((....)))))(((((((.((((((((((((.....(((.....)))..........((((.......)))).....)))))))))))).)))).))))))))))))))))))))))))))))))))))))))))))).))))).)))))).)).)).)))))))))
(((((((..((.((.((..((...((((.(((((.((((((((((((((((((((((((((((((((((((((((.(((((....)))))(((((((.((((((((((((.....(((.....)))..........((((.......)))).....)))))))))))).)))).))))))))))))))))))))))))))))))))))))))))))).))))).)))))).)).)).)))))))))
Structure
ag a g gg uac a a cggucucgugagacu - a uuuaccagaacaacugagaacu
uuacucc ga ac aa gu ugga uuuug ugggaagagaugaaaaacaCCGAGCUCCCAGGGUUAAUGG agg gguc cagagauuaggc c
||||||| || || || || |||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||
agugagg cu ug uu ca accu aaaau acCCUUCUCUACUUUUUGUGGUUugaggguccuaauuacc uuc ccag gucucuaguccg a
-- a g -a --- g a --------------- a c cuacaucuaauuagaauagaaa
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
scaffold00004: 6062147-6062392 [+]
Database links
Mature atr-miR8588-5p
| Accession | MIMAT0033875 |
| Description | Amborella trichopoda atr-miR8588-5p mature miRNA |
| Sequence | 55 - CCGAGCUCCCAGGGUUAAUGG - 75 |
| Evidence |
experimental
Illumina [1] |
Mature atr-miR8588-3p
| Accession | MIMAT0058667 |
| Description | Amborella trichopoda atr-miR8588-3p mature miRNA |
| Sequence | 195 - UUGGUGUUUUUCAUCUCUUCC - 215 |
| Evidence |
experimental
unknown |
References
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