Stem-loop atr-MIR8589

Accession

MI0027477

Description

Amborella trichopoda atr-MIR8589 precursor miRNA

Sequence

83 reads, 68.0 reads per million, 2 experiments

cucuccucuguucacugccgugugcuucaucuagacaaucagacccuucuaccaggcguguaUCCAUGGUCGAGAAAACUUGGUCCUuacauugauguaAGGACCACGAUUUUUCGGCCACGGaaacacauacgguggcaggaguuugauaggaaugaagcacacacaacaguaaagggggaag
...((((((....((((..(((((((((((.....(.((((((((((.(((((....((((.(((.(((((((((((.(.(((((((((((....))))))))))).).))))))))))).))).))))....))))).))).))))))).)..)))))))))))....))))...))))))..

Structure

cuc      guuc    --cc           cuaga a       -   u     aggc    a   A           A U           u 
   uccucu    acug    gugugcuucau     c aucagac ccu cuacc    gugu UCC UGGUCGAGAAA C UGGUCCUuaca u
   ||||||    ||||    |||||||||||     | ||||||| ||| |||||    |||| ||| ||||||||||| | |||||||||||  
   aggggg    ugac    cacacgaagua     g uaguuug gga ggugg    caca aGG ACCGGCUUUUU G ACCAGGAaugu g
-ga      -aaa    aaca           ---ag a       a   c     caua    a   C           A C           a 

Annotation confidence Medium

Genome context

scaffold00055: 2362010-2362193 [-]

Mature atr-miR8589-5p

• Accession: MIMAT0058668
• Description: Amborella trichopoda atr-miR8589-5p mature miRNA
• Sequence: 63 - UCCAUGGUCGAGAAAACUUGGUCCU - 87
• Evidence: experimental ; unknown

Mature atr-miR8589-3p

• Accession: MIMAT0033876
• Description: Amborella trichopoda atr-miR8589-3p mature miRNA
• Sequence: 100 - AGGACCACGAUUUUUCGGCCACGG - 123
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089