miRBase entry: atr-MIR8592

Stem-loop atr-MIR8592


Accession
MI0027480
Description
Amborella trichopoda atr-MIR8592 precursor miRNA


Sequence

172 reads, 276 reads per million, 3 experiments
uuauauaauacguaaguaauacuuuggaccuuggguuuucuacuugucauccuaaucguuggaacucacaauguagguagguauugacuguaugaguucauuagaugagaagagguugccuaugguuugugccucuuuuggaucuucucucuagucuuagaagagcaagaagcaacauacuaucuugaaacucaagugcagugaugagguggaaaauaaagcuaacgauacuuccaauacugaauuuugaguuuucaagauaaucuguugcuucuuguucuuagaagacuagagagaugauccaaaaaaggcagaaacaggugaccucuucucAUCUAAUGAACUCAUCCCGUCAGUaccuaccuacauuaugagcuccaaauucauaugacaaguagaaaauucaagguccaaaguauuccuuuugcacuaaauaa
...........(((((.(((((((((((((((((((((((((((((((((........(((((.((((.(((((((((((((((((((.(.((((((((((((((((((((((((((((((...((((.(((((.(((((((((.(((((((((((((..(((((((((((((((((...((((((((((((((((..(((((..((((((.................))))))...)))))...)))))).))))))))))...)))))))))))))))))..))))))))))))).))))))))).))))).)))))))))))))))))))))))))))))))))).).))))))))))))))))))).)))).)))))......)))))))))))))))))))))))))))))))))...))))).........

Structure
uuauauaauac     --u                                 ccuaaucg     a    c                   u u                              aug    g     c         u             ag                 uac          -      -ug     -au      gaaaaua 
           guaag   aauacuuuggaccuuggguuuucuacuugucau        uugga cuca aauguagguagguauugac g augaguucauuagaugagaagagguugccu   guuu ugccu uuuuggauc ucucucuagucuu  aagagcaagaagcaaca   uaucuugaaa cucaag   cagug   gaggug       a
           |||||   |||||||||||||||||||||||||||||||||        ||||| |||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||   |||| ||||| ||||||||| |||||||||||||  |||||||||||||||||   |||||||||| ||||||   |||||   ||||||       a
           cguuu   uuaugaaaccuggaacuuaaaagaugaacagua        aaccu gagu uuacauccauccaUGACUG C UACUCAAGUAAUCUAcucuucuccagugga   caaa acgga aaaaccuag agagagaucagaa  uucuuguucuucguugu   auagaacuuu gaguuu   gucau   cuucau       g
--aauaaauca     ucc                                 --uacuua     c    a                   C C                              ---    g     a         u             ga                 cua          u      uaa     aac      agcaauc 


Annotation confidence Not enough data
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Genome context
scaffold00066: 1786946-1787382 [-]

Database links

Mature atr-miR8592

Accession MIMAT0033879
Description Amborella trichopoda atr-miR8592 mature miRNA
Sequence 334 - AUCUAAUGAACUCAUCCCGUCAGU - 357
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089