Stem-loop atr-MIR8593

Accession

MI0027481

Description

Amborella trichopoda atr-MIR8593 precursor miRNA

Sequence

172 reads, 197 reads per million, 3 experiments

uuccuaguaguccauuccauaggucuuaauaaacccuucaacuaaucuuacauuguauauguuaaccguaccaucagccauguacuucacauuguagacccauuugcagcaaaccaacuucuucccuucugaaggcucaaccgguuuccaaguauuaugcuuaaguaauacuuccauuuccucacacauagccucgugccauuuaggaugagcuaagaccucuauaacaucggaaggaaauagaaacaugaaacaaauagggaguauagaggUCUUAGCUUGUCCUAAAAGGCAUGaggcuaugugugaggagaugggagcauuucuugagcauaauacuugggaacugguugacccuucagaagggaagaaguugguuugcugcaaauggguauacaaugugaaguccauggcugaugguacgguuaacauauacaaugugagauugguggcugaaggguuuauuaagaccuauggaauugacaaauagaaa
...(((...(((.(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((((((((((((.((((((((((((((((((((((((((((((((((((((.(((((((((((((((((((((((((((((.(((.((((((((((((((((((((((((((((((.(((((((((((((((((((((((((...((............................))...))))))))))))))))))))))))).)))))))))))))))))))))))))))))).))).))))))))))))))))))))))))))))).)))))))))))))))))))))))))))))))))))))).))))))))))))).))))))))))))))))))))))))))))))))))))))))))...))))))))))))))))))))))))))).)))...)))...

Structure

uuc   gua   c                           ---                                          u             g                                      c                             u   a                              a                         aca  ggaaggaaauaga 
   cua   guc auuccauaggucuuaauaaacccuuca   acuaaucuuacauuguauauguuaaccguaccaucagccaug acuucacauugua acccauuugcagcaaaccaacuucuucccuucugaagg ucaaccgguuuccaaguauuaugcuuaag aau cuuccauuuccucacacauagccucgugcc uuuaggaugagcuaagaccucuaua   uc             a
   |||   ||| |||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||              
   gau   cag uaagguauccagaauuauuugggaagu   ugguuagaguguaacauauacaauuggcaugguagucgguac ugaaguguaacau uggguaaacgucguuugguugaagaagggaagacuucc aguuggucaaggguucauaauacgaguuc uua gaggguagaggaguguguaucggaGUACGG AAAUCCUGUUCGAUUCUggagauau   gg             a
aaa   aaa   u                           cgg                                          c             a                                      c                             u   c                              A                         gag  auaaacaaaguac 

Annotation confidence Not enough data

Genome context

scaffold00072: 189561-190053 [+]

Mature atr-miR8593

• Accession: MIMAT0033880
• Description: Amborella trichopoda atr-miR8593 mature miRNA
• Sequence: 273 - UCUUAGCUUGUCCUAAAAGGCAUG - 296
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089