miRBase entry: atr-MIR8565h

Stem-loop atr-MIR8565h


Accession
MI0027482
Description
Amborella trichopoda atr-MIR8565h precursor miRNA


Sequence

788 reads, 590 reads per million, 4 experiments
guaauuuuguuauucaauuauguuaguauuuauuuuaugaguaauuaucuuaugagacccuuccacacucauguaugcuggacuucaaaggaucaaccAUUAAAUUUGGCAUAGAUCUUUAGaaaaguuaucacaugacugugaaauuugacuuucuuagagaucugugucaaauuuaaugguaaucuuuugggguccuacacacaugggugaggaggaucuuacaaggucauuucucuuguuuuauuuaggugauuuggaauuuauauauaauuuaugguuauuac
(((((...((((((((...(((........)))....)))))))).(((((.(((((.(((.((.(((((((((.((..((((((((((((((..(((((((((((((((((((((((((((.((((((((((((....)))))....))))))).))))))))))))))))))))))))))).))))))))))))))..)).))))))))).))))).))))).)))))((..((.((((.......)))).))..))(((((.......)))))......)))))

Structure
     -----------uuuguuauucaauuauguuaguauuuauuuuaugaguaauu     a     c   u  a         a  cu              ca                           a       ----     u 
guaau                                                    aucuu ugaga ccu cc cacucaugu ug  ggacuucaaaggau  accAUUAAAUUUGGCAUAGAUCUUUAG aaaguua    ucaca g
|||||                                                    ||||| ||||| ||| || ||||||||| ||  ||||||||||||||  ||||||||||||||||||||||||||| |||||||    |||||  
cauua                                                    uggaa auucu gga gg guggguaca ac  ccugggguuuucua  ugguaauuuaaacugugucuagagauu uuucagu    agugu a
     uugguauuuaauauauauuuaagguuuaguggauuuauuuuguucucuuuac     c     a   -  a         c  au              -a                           c       uuaa     c 


Annotation confidence Low
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Genome context
scaffold00076: 816642-816928 [-]

Database links

Mature atr-miR8565h

Accession MIMAT0033881
Description Amborella trichopoda atr-miR8565h mature miRNA
Sequence 99 - AUUAAAUUUGGCAUAGAUCUUUAG - 122
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089