miRBase entry: atr-MIR8594

Stem-loop atr-MIR8594


Accession
MI0027483
Description
Amborella trichopoda atr-MIR8594 precursor miRNA


Sequence

404 reads, 390.0 reads per million, 2 experiments
aacacaauucuuUUAUCAACAGUAUCAAUGGAUAUGUuaagcaaauaaauguacuauaccuaaguauaauaauguaauuaucaagacaaagauagagaaaguagauauaucuccuuucucuaucuuugucuugaaaauuauauuauuauacuuagguguacguuuauuugcguaacaUAUCCAUUGAUACUGUUGAUGAAAgaauuguauu
...((((((((((((((((((((((((((((((((((((.((((((((((((((...((((((((((((((((((((((.(((((((((((((((((((((.(((....))).))))))))))))))))))))).)))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))))))))))))))...

Structure
aac                                    a              uau                      a                     u   u 
   acaauucuuUUAUCAACAGUAUCAAUGGAUAUGUua gcaaauaaauguac   accuaaguauaauaauguaauu ucaagacaaagauagagaaag aga a
   |||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||| |||  
   uguuaagAAAGUAGUUGUCAUAGUUACCUAUacaau cguuuauuugcaug   uggauucauauuauuauauuaa aguucuguuucuaucucuuuc ucu u
uua                                    g              ---                      a                     c   a 


Annotation confidence High
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Genome context
scaffold00081: 1136049-1136259 [-]

Database links

Mature atr-miR8594-5p

Accession MIMAT0033882
Description Amborella trichopoda atr-miR8594-5p mature miRNA
Sequence 13 - UUAUCAACAGUAUCAAUGGAUAUGU - 37
Evidence experimental
Illumina [1]

Mature atr-miR8594-3p

Accession MIMAT0033883
Description Amborella trichopoda atr-miR8594-3p mature miRNA
Sequence 178 - UAUCCAUUGAUACUGUUGAUGAAA - 201
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089