miRBase entry: atr-MIR8594

Stem-loop atr-MIR8594


Accession
MI0027483
Description
Amborella trichopoda atr-MIR8594 precursor miRNA


Sequence

397 reads, 280 reads per million, 3 experiments
aacacaauucuuUUAUCAACAGUAUCAAUGGAUAUGUUAAGCAAAUAAAUguacuauaccuaaguauaauaauguaauuaucaagacaaagauagagaaaguagauauaucuccuuucucuaucuuugucuugaaaauuauauuauuauacuuagguguacguuuauuugcguaacauauccauugauacuguugaugaaagaauuguauu
...((((((((((((((((((((((((((((((((((((.((((((((((((((...((((((((((((((((((((((.(((((((((((((((((((((.(((....))).))))))))))))))))))))).)))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))))))))))))))...

Structure
aac                                    A              uau                      a                     u   u 
   acaauucuuUUAUCAACAGUAUCAAUGGAUAUGUUA GCAAAUAAAUguac   accuaaguauaauaauguaauu ucaagacaaagauagagaaag aga a
   |||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||| |||  
   uguuaagaaaguaguugucauaguuaccuauacaau cguuuauuugcaug   uggauucauauuauuauauuaa aguucuguuucuaucucuuuc ucu u
uua                                    g              ---                      a                     c   a 


Annotation confidence Not enough data
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Genome context
scaffold00081: 1136049-1136259 [-]

Database links

Mature atr-miR8594.1

Accession MIMAT0033882
Description Amborella trichopoda atr-miR8594.1 mature miRNA
Sequence 13 - UUAUCAACAGUAUCAAUGGAUAUG - 36
Evidence experimental
Illumina [1]

Mature atr-miR8594.2

Accession MIMAT0033883
Description Amborella trichopoda atr-miR8594.2 mature miRNA
Sequence 27 - AAUGGAUAUGUUAAGCAAAUAAAU - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089