Accession
MI0027485
Description
Amborella trichopoda
atr-MIR8596 precursor miRNA
Sequence
974
reads,
796.0
reads per million, 2 experiments
gcaagauggACCAUUUUUAGGCCUUGAAAUccauuuuugucagauccaagaacaucaaguuggagaugauuuauuuguagguuucugccuuuugaauugaguucuucgucaagauuuaagguguguuauuggaaaagcauuucauaaagccucaauuuuacaaauugacaucucaaguuuagccaugaaauugguuuuugagugcuggaaaacuugcaaauugaucaucucaaccucgauuaucauggacuugaaagaAAAUGGAUUUCAAGCUCUAAAAAUaguucaucuugc
(((((((((((.(((((((((.((((((((((((((((.((((.((((.((..(((.((...(((((((((.(((((((((((((((((((.....((((........)))).....)))))(((((........)))))...........(((((((...)))))))((.((((((...(((((......)))))))))))))..)).)))))))))))).)))))))))...)).)))..)).)))).))))..)))))))))))))))).))))))))).)))))))))))
(((((((((((.(((((((((.((((((((((((((((.((((.((((.((..(((.((...(((((((((.(((((((((((((((((((.....((((........)))).....)))))(((((........)))))...........(((((((...)))))))((.((((((...(((((......)))))))))))))..)).)))))))))))).)))))))))...)).)))..)).)))).))))..)))))))))))))))).))))))))).)))))))))))
Structure
C C -g a a ac a uug u - gccuuuugaauugaguucuucgucaagauuuaagguguguuauuggaaaagcauuucauaaagccucaauuuuacaaauuga u uuu ug
gcaagauggAC AUUUUUAGG CUUGAAAUccauuuuu ucag ucca ga auc ag gagaugauu auuuguagguuu cu ca cucaag agcca a
||||||||||| ||||||||| |||||||||||||||| |||| |||| || ||| || ||||||||| |||||||||||| || || |||||| |||||
cguucuacuug UAAAAAUCU GAACUUUAGGUAAAag aguu aggu cu uag uc cucuacuag uaaacguucaaa gg gu gaguuu uuggu a
a C aa c a au c caa u a --------------------------------------------------------------------------------uc - --- ua
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
scaffold00086: 2246834-2247127 [+]
Database links
Mature atr-miR8596-5p
| Accession | MIMAT0058675 |
| Description | Amborella trichopoda atr-miR8596-5p mature miRNA |
| Sequence | 10 - ACCAUUUUUAGGCCUUGAAAU - 30 |
| Evidence |
experimental
unknown |
Mature atr-miR8596-3p
| Accession | MIMAT0033885 |
| Description | Amborella trichopoda atr-miR8596-3p mature miRNA |
| Sequence | 259 - AAAUGGAUUUCAAGCUCUAAAAAU - 282 |
| Evidence |
experimental
Illumina [1] |
References
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