Stem-loop atr-MIR8597

Accession

MI0027486

Description

Amborella trichopoda atr-MIR8597 precursor miRNA

Sequence

748 reads, 996.0 reads per million, 2 experiments

uuuuugguacaauauuuuccuucauuuuauguguaccuauauuaggaagguaguucauuacauauauuacuuuuuUUAGUGGUACACAACUUUGUAACCuuauaaauuggggcucaugugagaaaauacugaauuucaauguauuucagagcccucauggcuuauugaagauguguacaagagccccaauuuauaaaguuacaaaGCUGUGUACUAUUAAAAAAaauaacaaaugaaugaaucacuuuccuaauauggauacacauaaaaggaaauaagauauuguacacaaaaa
.(((((((((((((((((..(((.(((((((((((.(((((((((((((((.(((((((.(((...(((.((((((((((((((((((.(((((((((.((((((((((((((((.(((......((((....(((((((........(((((.....))))))))))))..))))))).)))))))))))))))).))))))))).)))))))))))))))))).)))...)))))))))).))))))))))))))).))))))))))).)))..)))))))))))).))))).

Structure

u     -            cc   a           c               a       a   aua   c                  A         C                a   gagaaa    ugaa       guauuuca     c 
 uuuug guacaauauuuu  uuc uuuuaugugua cuauauuaggaaggu guucauu cau   uua uuuuuUUAGUGGUACACA CUUUGUAAC uuauaaauuggggcuc ugu      auac    uuucaau        gagcc u
 ||||| ||||||||||||  ||| ||||||||||| ||||||||||||||| ||||||| |||   ||| |||||||||||||||||| ||||||||| |||||||||||||||| |||      ||||    |||||||        ||||| c
 aaaac cauguuauagaa  aag aaaauacacau gguauaauccuuuca uaaguaa gua   aau aAAAAAAUUAUCAUGUGU Gaaacauug aauauuuaaccccgag aca      ugug    gaaguua        uucgg a
a     a            ua   g           a               c       -   aac   a                  C         a                a   ------    --ua       --------     u 

Annotation confidence Medium

Genome context

scaffold00090: 2346852-2347146 [-]

Mature atr-miR8597-5p

• Accession: MIMAT0033886
• Description: Amborella trichopoda atr-miR8597-5p mature miRNA
• Sequence: 76 - UUAGUGGUACACAACUUUGUAACC - 99
• Evidence: experimental ; Illumina [1]

Mature atr-miR8597-3p

• Accession: MIMAT0058676
• Description: Amborella trichopoda atr-miR8597-3p mature miRNA
• Sequence: 206 - GCUGUGUACUAUUAAAAAA - 224
• Evidence: experimental ; unknown

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089