Stem-loop atr-MIR8599

Accession

MI0027488

Description

Amborella trichopoda atr-MIR8599 precursor miRNA

Sequence

108 reads, 106.0 reads per million, 2 experiments

aggaaguggaguagaggaugauaugccaaaauggcuugaguucuaaccuugaauugaguuccuucacaauauuguaacuguuuuucauauagguaggugucuucaaguguugacaugugucaAAGUGUCAACACAUGUCGUCAUGcgauaccaaccaaaaagugaaguguuguggugccguugugaugaaguagauuuaucauauauagguuuuuuagaaguaauauggaaauggaaauguuuggccccucuuuaaugugaucuucuugauggcaauguuacaacgacauucaccuuuugauuggugucgcuuuucgauauacguugacacuuugaaaugugucaacacuugaggacacuuggcuguauagaaaacaaacaaaauuguggaagggcucauugcaauGUUUGAACUCAAACUAUUUUGACAUauugucuucuacucuaccaccu
(((..((((((((((((((((((((.((((((((.((((((((.(((.(((...(((((((.((((((((.((((...(((((((.((((((.(((((((((((((((((((((((((.(((((((((((((..((((((....((((((((((.(((((.(((((.((((((.(((.((((((.((.(((.(((....((((((..(((....(((((.....(((....)))......))))).....)))..))))))))).))).)).)))))).))).))))))))))).))))).))))))))))....))))))..))))))))))))).))))))))))))))))))))))))).)))))).))))))).)))).)))))))).)))))))...))).))).)))))))).)))))))).))))))))))))))))))))..)))

Structure

   aa                    c        c        u   c   aau       c        a    aac       c      g                         g             AC      UCAU          c     a     g      g   c      g  g   u   uuua      au   -uuuu     -aguaa   g 
agg  guggaguagaggaugauaug caaaaugg uugaguuc aac uug   ugaguuc uucacaau uugu   uguuuuu auauag uaggugucuucaaguguugacaugu ucaAAGUGUCAAC  AUGUCG    Gcgauaccaa caaaa gugaa uguugu gug cguugu au aag aga    ucauau  agg     uuaga      uau g
|||  |||||||||||||||||||| |||||||| |||||||| ||| |||   ||||||| |||||||| ||||   ||||||| |||||| ||||||||||||||||||||||||| |||||||||||||  ||||||    |||||||||| ||||| ||||| |||||| ||| |||||| || ||| |||    ||||||  |||     |||||      |||  
ucc  caucucaucuucuguuaUAC GUUUUAUC AACUCAAG UUG aac   acucggg agguguua aaca   acaaaag uauguc guucacaggaguucacaacugugua aguuucacaguug  uauagc    cgcugugguu guuuu cacuu acagca cau guaacg ua uuc ucu    agugua  uuc     gguuu      gua a
   ac                    A        A        U   u   guu       a        a    --a       a      g                         a             ca      uuuu          a     c     -      a   u      g  g   u   ----      au   ucccc     guaaag   a 

Annotation confidence Not enough data

Genome context

scaffold00099: 2088970-2089422 [+]

Mature atr-miR8599-5p

• Accession: MIMAT0033888
• Description: Amborella trichopoda atr-miR8599-5p mature miRNA
• Sequence: 123 - AAGUGUCAACACAUGUCGUCAUG - 145
• Evidence: experimental ; Illumina [1]

Mature atr-miR8599-3p

• Accession: MIMAT0061225
• Description: Amborella trichopoda atr-miR8599-3p mature miRNA
• Sequence: 407 - GUUUGAACUCAAACUAUUUUGACAU - 431
• Evidence: experimental ; unknown

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089