Accession
MI0027490
Description
Amborella trichopoda
atr-MIR8601 precursor miRNA
Sequence
218
reads,
221.0
reads per million, 2 experiments
uguuuaugaagaaauuuugaacucagggaacguuugggaugcgugaaaauacuuuugugaaaauauuuuuacaugaaagaacucucccaUGCGAUUAGGUGUUGGAGUUUuuucacaccaauuggcagauaauugCUGUGAAAGAACUCUCACACcuaaucgcaugggggaggucuuucaugugaauacgaaaguauuuuuacauguaccaaacgugcacucauguacucuacauuucugugcauguca
.(((((...........)))))..((...((((((((.(((.(((((((((((((((((........(((((((((((((.(((((((((((((((((((((.((((((((((((((.((((((.....)))))).)))))))))))))).))))))))))))))))))))).)))))))))))))))))))))))))))))).))).))))))))...))(((((((...........)))))))...
.(((((...........)))))..((...((((((((.(((.(((((((((((((((((........(((((((((((((.(((((((((((((((((((((.((((((((((((((.((((((.....)))))).)))))))))))))).))))))))))))))))))))).)))))))))))))))))))))))))))))).))).))))))))...))(((((((...........)))))))...
Structure
----uguuuaugaagaaauuuugaacuc gga g c aaaauauu a U c g
ag acguuugg aug gugaaaauacuuuugug uuuacaugaaaga cucucccaUGCGAUUAGGUGU GGAGUUUuuucaca caauug c
|| |||||||| ||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||| a
uc ugcaaacc ugu cauuuuuaugaaagcau aaguguacuuucu gaggggguacgcuaaucCACA UCUCAAGAAAGUGU guuaau g
acuguacgugucuuuacaucucauguac acg a a -------- g C C a
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
scaffold00103: 2041972-2042220 [+]
Database links
Mature atr-miR8601-5p
| Accession | MIMAT0033890 |
| Description | Amborella trichopoda atr-miR8601-5p mature miRNA |
| Sequence | 90 - UGCGAUUAGGUGUUGGAGUUU - 110 |
| Evidence |
experimental
Illumina [1] |
Mature atr-miR8601-3p
| Accession | MIMAT0058680 |
| Description | Amborella trichopoda atr-miR8601-3p mature miRNA |
| Sequence | 136 - CUGUGAAAGAACUCUCACAC - 155 |
| Evidence |
experimental
unknown |
References
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