miRBase entry: atr-MIR8602

Stem-loop atr-MIR8602


Accession
MI0027491
Description
Amborella trichopoda atr-MIR8602 precursor miRNA


Sequence

8823 reads, 3683 reads per million, 4 experiments
ugagauuggaucucccugcUCAGGAGAGAUGAUGCCGGCCaaucucucugacacauggccggcaucaucucuucuaggccgggaccaucccaucaca
...(((.((((.((((.(((.((((((((((((((((((((.((.....))....)))))))))))))))))))).))).))))..)))).)))...

Structure
uga   u    -c    u   C                    ---a  u 
   gau ggau  uccc gcU AGGAGAGAUGAUGCCGGCCa    uc c
   ||| ||||  |||| ||| ||||||||||||||||||||    || u
   cua ccua  aggg cgg ucuucucuacuacggccggu    ag c
aca   c    cc    c   a                    acac  u 


Annotation confidence High
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Genome context
scaffold00108: 1352014-1352110 [-]

Database links

Mature atr-miR8602

Accession MIMAT0033891
Description Amborella trichopoda atr-miR8602 mature miRNA
Sequence 20 - UCAGGAGAGAUGAUGCCGGCC - 40
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089