Accession
MI0027492
Description
Amborella trichopoda
atr-MIR8603 precursor miRNA
Sequence
1442
reads,
1383.0
reads per million, 2 experiments
gguguuuagcuguuugcaugccaaauacgagcuuacugacauccuaggcucaaaauucauaccccucauccgauucuuuuacuuuacaugccgaaucacaugcucaaagaaauccucaAAUGCGAAGACUUGGAACGUgaagguauggccgagccuaucagggugguaaauuuggagacaucccacaguggauuucuuUGAGCUUGUGGUUCGACAUGUaugggaaucucaucuuggaugaggggauaaauuuugagccuaaaggggaugaauuuugagccuaggcgggcaguucgcauc
(((((...((.....))))))).....((((((..(((....((((((((((((((((((.((((((((((((........((.((((((.(((((((((.((((((((((((((.(......((((.(((((..((((....)))).))))).)).)).(((((.............)))))....).)))))))))))))).))))))))).)))))).))..........))))))))))))............(((....))))))))))))))))))))))))..))))))....
(((((...((.....))))))).....((((((..(((....((((((((((((((((((.((((((((((((........((.((((((.(((((((((.((((((((((((((.(......((((.(((((..((((....)))).))))).)).)).(((((.............)))))....).)))))))))))))).))))))))).)))))).))..........))))))))))))............(((....))))))))))))))))))))))))..))))))....
Structure
gguguuuagcuguuugcaugccaaaua ua acau ---------------------a --uucuuuua u c u u ----------------------aAAUGC - A AA a
cgagcu cug ccuaggcucaaaauucau ccccucauccga cu uacaug cgaaucaca gcucaaagaaaucc c GA AG CUUGG CGUg a
|||||| ||| |||||||||||||||||| |||||||||||| || |||||| ||||||||| |||||||||||||| | || || ||||| ||||
gcuuga ggc ggauccgaguuuuaagua ggggaguagguu gg aUGUAC GCUUGGUGU CGAGUuucuuuagg g cu uc gagcc guau g
-----------------------cuac cg ---- ggggaaauccgaguuuuaaaua cuacucuaag u A U u acacccuacagagguuuaaaugguggga a c -g g
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
scaffold00116: 1378281-1378580 [+]
Database links
Mature atr-miR8603-5p
| Accession | MIMAT0058681 |
| Description | Amborella trichopoda atr-miR8603-5p mature miRNA |
| Sequence | 119 - AAUGCGAAGACUUGGAACGU - 138 |
| Evidence |
experimental
unknown |
Mature atr-miR8603-3p
| Accession | MIMAT0033892 |
| Description | Amborella trichopoda atr-miR8603-3p mature miRNA |
| Sequence | 199 - UGAGCUUGUGGUUCGACAUGU - 219 |
| Evidence |
experimental
Illumina [1] |
References
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