miRBase entry: atr-MIR8604

Stem-loop atr-MIR8604


Accession
MI0027493
Description
Amborella trichopoda atr-MIR8604 precursor miRNA


Sequence

740 reads, 749.0 reads per million, 2 experiments
accucaccgcauaugugccaaaaggaaaaucaaaaggugcuccucaagaugccacuuguaagaguggaagugCAUGAAGGACACUUAGUGCAAGAGugaaaacauggugaggguaugaaaaaguuuugcaaaaguauggugcaucuacaagaccacaaaauucaaguagacuagcagcuaaagaauguugauuuugaaacauaaauuuuagcaaaaagcuaacaaagugguagcuuuuuucuaaaauuuuuguuucaaaacauuuuuuauuggcuguuauuuuaaaugacucugugugguuAUGUAGGAUUGCCAUUACUUUUGGAaaacuuuuucauacucuuaccauguuuucacacuugcuuuauguguccuucaugcauugccacucuuacaaguggcauccguaggagcaccuuuugauuguucuuugacacauauuuggugaggu
(((((((((.(((((((.((((.(((.(((((((((((((((((...((((((((((((((((((((.((((((((((((((((.(((.(((((.((((((((((((((((((((((((((((((((.((((((((((((...((((((.(((((((....(((..((((.((((((((((.(((...((.((((((((((.(((((((((.(((((((((.((...)).))))))))).))))))))).))))))))))))...))).)))))))))).))))..))).....))))))).))))))...)))).)))))))).)))))))))))))))))))))))))))))))).))))).))).)))))))))))))))).))))))))))))))))))))...))))))))))))))))).))))))).))))))).)))))))))

Structure
         c       c    a   a                 caa                    a                U   U     A                                g        -    gca      a       -aaau   ag    c          a   ugu  a          u         c         a  a 
accucaccg auaugug caaa gga aaucaaaaggugcuccu   gaugccacuuguaagagugg agugCAUGAAGGACAC UAG GCAAG Gugaaaacauggugaggguaugaaaaaguuuu caaaagua uggu   ucuaca gaccaca     uca  uaga uagcagcuaa gaa   ug uuuugaaaca aaauuuuag aaaaagcua ca  
||||||||| ||||||| |||| ||| |||||||||||||||||   |||||||||||||||||||| |||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||   |||||| |||||||     |||  |||| |||||||||| |||   || |||||||||| ||||||||| ||||||||| || a
uggaguggu uauacac guuu cuu uuaguuuuccacgagga   cuacggugaacauucucacc uuacguacuuccugug auu cguuc cacuuuuguaccauucucauacuuuuucaaaA GUUUUCAU ACCG   GGAUGU uuggugu     agu  auuu auugucgguu uuu   ac aaaacuuugu uuuaaaauc uuuuucgau gu  
         u       a    -   g                 ugc                    g                u   u     a                                G        U    UUA      A       gucuc   aa    u          a   uuu  -          u         u         g  g 


Annotation confidence Low
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Genome context
scaffold00116: 2036317-2036767 [-]

Database links

Mature atr-miR8604-5p

Accession MIMAT0033893
Description Amborella trichopoda atr-miR8604-5p mature miRNA
Sequence 73 - CAUGAAGGACACUUAGUGCAAGAG - 96
Evidence experimental
Illumina [1]

Mature atr-miR8604-3p

Accession MIMAT0058682
Description Amborella trichopoda atr-miR8604-3p mature miRNA
Sequence 302 - AUGUAGGAUUGCCAUUACUUUUGGA - 326
Evidence experimental
unknown

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089