Stem-loop atr-MIR8610

Accession

MI0027500

Description

Amborella trichopoda atr-MIR8610 precursor miRNA

Sequence

290 reads, 120 reads per million, 4 experiments

uugaucauucccucucuccuacccaauguugugagauuucgcuucagaACCUUCUUCGGUUUGUUCAGAAAAauuaagcgcuucaguacuucuuccgauucugaggaagacuucggauuuauauuaaguuaaaaaaaaaaaaucugaagucucuccccuaaucugccaaauuaccgaagugcuucauuuUUCUGACCAAAUUGAAGGAGGuucugaaacgaaucuaacaauauuggucaaagcaacauaaccgaugucaa
.(((.((((.............((((((((((.(((((.((.(((((((((((((((((((((.((((((((((.(((((((((.(((........((((..(.((((((((((((((((...................))))))))))))).))))..))))........))).))))))))).)))))))))).))))))))))))))))))))).))))))).))))))))))................))))))).

Structure

u   u    ---cccucucuccuac          g     u  c                     U          u         a   cuucuucc    cu a   -             auauuaag 
 uga cauu                ccaauguugu agauu cg uucagaACCUUCUUCGGUUUG UCAGAAAAau aagcgcuuc gua        gauu  g gga agacuucggauuu        u
 ||| ||||                |||||||||| ||||| || ||||||||||||||||||||| |||||||||| ||||||||| |||        ||||  | ||| |||||||||||||        u
 acu guag                gguuauaaca ucuaa gc aagucuuGGAGGAAGUUAAAC AGUCUUuuua uucgugaag cau        cuaa  c ccu ucugaagucuaaa        a
a   -    ccaauacaacgaaacu          a     -  a                     C          c         c   uaaaccgu    uc -   c             aaaaaaaa 

Annotation confidence High

Genome context

scaffold00210: 197058-197317 [+]

Mature atr-miR8610.1

• Accession: MIMAT0033901
• Description: Amborella trichopoda atr-miR8610.1 mature miRNA
• Sequence: 49 - ACCUUCUUCGGUUUGUUCAGAAAA - 72
• Evidence: experimental ; Illumina [1]

Mature atr-miR8610.2

• Accession: MIMAT0033902
• Description: Amborella trichopoda atr-miR8610.2 mature miRNA
• Sequence: 190 - UUCUGACCAAAUUGAAGGAGG - 210
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089