Accession
MI0027505
Description
Amborella trichopoda
atr-MIR156a precursor miRNA
Sequence
2634
reads,
2125.0
reads per million, 2 experiments
aggguuuauaugugagggaguaaguaauagagagagggggucugguguugUUGACAGAAGAUAGAGAGCACauaaaguaacgugcagugggcguuugcauuuuauuuuguauguGCUCUCUAGCCUUCUGUCAUCaccugcucaccauucccacccaucuuacuucuccaacauauuucuaauccu
((((((...(((((..((((.(((((....(((..(((((..(((((..(((((((((((.(((((((((((((((((((.((((((.......)))))).))))))..)))))))))))))..)))))))))......)).)))))..))).))..))))))))))))..)))))....))))))
((((((...(((((..((((.(((((....(((..(((((..(((((..(((((((((((.(((((((((((((((((((.((((((.......)))))).))))))..)))))))))))))..)))))))))......)).)))))..))).))..))))))))))))..)))))....))))))
Structure
-uau ag u auag ga - uc uu ------ -A -- c ug
aggguu augug ggag aagua aga gg ggg uggug gU UGACAGAAG UAGAGAGCACaua aaguaa gugcag g
|||||| ||||| |||| ||||| ||| || ||| ||||| || ||||||||| ||||||||||||| |||||| |||||| g
uccuaa uauac ccuc uucau ucu cc ccc accac cg ACUGUCUUC AUCUCUCGuguau uuuauu uacguu c
ucuu aa - ---- ac a uu -u uccaCU CG gu u ug
Annotation confidence
High
Do you think this miRNA is real?
Genome context
scaffold00044: 4041291-4041476 [+]
Database links
Mature atr-miR156a-5p
| Accession | MIMAT0033907 |
| Description | Amborella trichopoda atr-miR156a-5p mature miRNA |
| Sequence | 51 - UUGACAGAAGAUAGAGAGCAC - 71 |
| Evidence |
experimental
Illumina [1] |
Mature atr-miR156a-3p
| Accession | MIMAT0061202 |
| Description | Amborella trichopoda atr-miR156a-3p mature miRNA |
| Sequence | 115 - GCUCUCUAGCCUUCUGUCAUC - 135 |
| Evidence |
experimental
Illumina [1] |
References
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