Stem-loop atr-MIR156c

Accession

MI0027507

Description

Amborella trichopoda atr-MIR156c precursor miRNA

Sequence

2631 reads, 2123.0 reads per million, 2 experiments

gaugagcaggggagaugagcuugaaaguagaguugguugUUGACAGAAGAUAGAGAGCACaaaaccaacacaagcaauaggcuuucaugcuucuggaggauaugugcUCUCUAUACUUCUGCCACCAUGcccuuagaagcacucuauuucuauucccucucuucccuucccucuc
...(((.((((((((.(((..((.(((((((((.(((((.((.((((((((((((((((((...((..((.(((((...........))))).))..))...)))))))))))).)))))).)).)).))).........))))))))).))....)))))))))))...)))..

Structure

gau   --c        u   --cu  a         --------u   -  U  A      -            aaa  aa  c     auag 
   gag   aggggaga gag    ug aaguagagu         ggu ug UG CAGAAG AUAGAGAGCACa   cc  ca aagca    g
   |||   |||||||| |||    || |||||||||         ||| || || |||||| ||||||||||||   ||  || |||||    c
   cuc   ucccuucu cuc    au uuuaucuca         ccG AC AC GUCUUC UAUCUCUcgugu   gg  gu uucgu    u
-cu   ccu        -   ccuu  c         cgaagauuc   U  C  C      A            aua  ag  c     acuu 

Annotation confidence High

Genome context

scaffold00061: 4133431-4133605 [+]

Mature atr-miR156c-5p

• Accession: MIMAT0033909
• Description: Amborella trichopoda atr-miR156c-5p mature miRNA
• Sequence: 40 - UUGACAGAAGAUAGAGAGCAC - 60
• Evidence: experimental ; Illumina [1]

Mature atr-miR156c-3p

• Accession: MIMAT0061204
• Description: Amborella trichopoda atr-miR156c-3p mature miRNA
• Sequence: 108 - UCUCUAUACUUCUGCCACCAUG - 129
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089