Accession
MI0027515
Description
Amborella trichopoda
atr-MIR166c precursor miRNA
Sequence
717700
reads,
631995.0
reads per million, 2 experiments
ucagaugaugaugauauaugcauaugaguuguggGGAAUGUUGUCUGGCUCGAGGUacaucugggguuaucuugagucacauuccagaugaucUCGGACCAGGCUUCAUUCCCCUcaaccaagccgagcucauccuucuuauga
(((...((.(((((.....((...((.((((.((((((((..((((((.(((((((.((((((((((.............))))))))))))))))).))))))..)))))))).)))))).)).....)))))..))...)))
(((...((.(((((.....((...((.((((.((((((((..((((((.(((((((.((((((((((.............))))))))))))))))).))))))..)))))))).)))))).)).....)))))..))...)))
Structure
gau -u uauau aua a u UU C a uaucu uca ga gauga gc ug guug ggGGAAUG GUCUGG UCGAGGU caucuggggu u ||| || ||||| || || |||| |||||||| |||||| ||||||| |||||||||| g agu cu cuacu cg ac caac CCCCUUAC CGGACC GGCUcua guagaccuua a auu uc cgagc --a - U UU A - cacug
Annotation confidence
High
Do you think this miRNA is real?
Genome context
scaffold00128: 402019-402162 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from atr-MIR166c
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature atr-miR166c-5p
| Accession | MIMAT0061229 |
| Description | Amborella trichopoda atr-miR166c-5p mature miRNA |
| Sequence | 35 - GGAAUGUUGUCUGGCUCGAGGU - 56 |
| Evidence |
experimental
unknown |
Mature atr-miR166c-3p
| Accession | MIMAT0033917 |
| Description | Amborella trichopoda atr-miR166c-3p mature miRNA |
| Sequence | 94 - UCGGACCAGGCUUCAUUCCCCU - 115 |
| Evidence |
experimental
Illumina [1] |
References
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