Accession
MI0027516
Description
Amborella trichopoda
atr-MIR166d precursor miRNA
Sequence
486656
reads,
437027.0
reads per million, 2 experiments
uguuguggGGAAUGUUGGCUGGCUCGAGGccauccgauuuaggaaagccgcuucgguuggcauagucccgggugacaUCGGACCAGGCUUCAUUCCCCUcaaaca
..(((.((((((((..(.((((.((((.(.((((((.....(((..(((((....).))))....))))))))).).)))).)))).)..)))))))).)))...
..(((.((((((((..(.((((.((((.(.((((((.....(((..(((((....).))))....))))))))).).)))).)))).)..)))))))).)))...
Structure
-ug u UU G C G c auuua --aa - u uug ggGGAAUG G CUGG UCGA G cauccg gga gccg c u ||| |||||||| | |||| |||| | |||||| ||| |||| | aac CCCCUUAC C GACC GGCU c gugggc ccu cggu g c aca U UU G A a a ----- gaua u g
Annotation confidence
High
Do you think this miRNA is real?
Genome context
scaffold00128: 402266-402370 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from atr-MIR166d
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature atr-miR166d-5p
| Accession | MIMAT0061230 |
| Description | Amborella trichopoda atr-miR166d-5p mature miRNA |
| Sequence | 9 - GGAAUGUUGGCUGGCUCGAGG - 29 |
| Evidence |
experimental
unknown |
Mature atr-miR166d-3p
| Accession | MIMAT0033918 |
| Description | Amborella trichopoda atr-miR166d-3p mature miRNA |
| Sequence | 78 - UCGGACCAGGCUUCAUUCCCCU - 99 |
| Evidence |
experimental
Illumina [1] |
References
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