Stem-loop atr-MIR168

Accession

MI0027518

Description

Amborella trichopoda atr-MIR168 precursor miRNA

Sequence

15692 reads, 17424.0 reads per million, 2 experiments

ucaagagcuauccauggauugaggguccagagagaaacaugcaauacaaaaguuugggcuucuucuuacugcuuacucuagcUCGCUUGGUGCAGGUCGGGAAcccuucgcacuuuaauacccucacuagcagaggguuCCCGCCUUGCAUCAACUGAAUUggagacuacaguaaagauucgauguuuuacuaugauugcacuggauuuuuaucuugcggacaggucuga
...(((.((.(((..((((.((((((((((.........((((((.((..(((..((((.((.((((((((....((((((.(((.((((((((((.(((((((((((.((..................)).))))))))))).)))))))))).))).))))))....)))).))))...)).)))).))).))))))))))))))))))))))...))).)).)))..

Structure

uca   g  a   -au    u          agagaaaca      a  aa   uu    u  --u    -    cuua      c   C          U           c  acuuuaau 
   aga cu ucc   ggau gaggguccag         ugcaau ca  agu  gggc uc   ucuu acug    cucuag UCG UUGGUGCAGG CGGGAAcccuu gc        a
   ||| || |||   |||| ||||||||||         |||||| ||  |||  |||| ||   |||| ||||    |||||| ||| |||||||||| ||||||||||| ||         
   ucu ga agg   ucua uuuuuagguc         acguua gu  uca  uuug ag   agaa ugac    gaggUU AGU AACUACGUUC GCCCuugggag cg        c
-ag   g  c   cgu    -          ---------      -  -a   -u    u  cuu    a    auca      A   C          C           a  aucacucc 

Annotation confidence High

Genome context

scaffold00011: 8252667-8252896 [+]

Mature atr-miR168-5p

• Accession: MIMAT0033920
• Description: Amborella trichopoda atr-miR168-5p mature miRNA
• Sequence: 83 - UCGCUUGGUGCAGGUCGGGAA - 103
• Evidence: experimental ; Illumina [1]

Mature atr-miR168-3p

• Accession: MIMAT0061216
• Description: Amborella trichopoda atr-miR168-3p mature miRNA
• Sequence: 140 - CCCGCCUUGCAUCAACUGAAUU - 161
• Evidence: experimental ; unknown

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089