Stem-loop atr-MIR169a

Accession

MI0027519

Description

Amborella trichopoda atr-MIR169a precursor miRNA

Sequence

78 reads, 77.0 reads per million, 2 experiments

gguauaacaugaagagacaguguuauuuugaUAGCCAAGGAUGACUUGCCUacauccacaauguggaugguucuagggugcuauggccccaauuaagacccucauuaugagguuucuaGGCGGUCUCCUUGGCUAACCUGacugacccugucuucuaugcuagacc
(((.((.((((..(((((((.((((.((.(.((((((((((.((((.((((((((((((...)))))))......(((.((....))))).........(((((...)))))....))))))))))))))))))).)..)).)))).))))))).)))).)).)))

Structure

   a  a    aa       u    u  -u a          U    U     -----------------------------------------------       a 
ggu ua caug  gagacag guua uu  g UAGCCAAGGA GACU GCCUa                                               cauccac  
||| || ||||  ||||||| |||| ||  | |||||||||| |||| |||||                                               ||||||| a
cca au guau  uucuguc cagu aG  C AUCGGUUCCU CUGG CGGau                                               guaggug  
   g  c    -c       c    c  UC A          -    -     cuuuggaguauuacucccagaauuaaccccgguaucgugggaucuug       u 

Annotation confidence Medium

Genome context

scaffold00016: 2808583-2808748 [-]

Mature atr-miR169a-5p

• Accession: MIMAT0033921
• Description: Amborella trichopoda atr-miR169a-5p mature miRNA
• Sequence: 32 - UAGCCAAGGAUGACUUGCCU - 51
• Evidence: experimental ; Illumina [1]

Mature atr-miR169a-3p

• Accession: MIMAT0061231
• Description: Amborella trichopoda atr-miR169a-3p mature miRNA
• Sequence: 119 - GGCGGUCUCCUUGGCUAACCUG - 140
• Evidence: experimental ; unknown

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089