Accession
MI0027520
Description
Amborella trichopoda
atr-MIR169b precursor miRNA
Sequence
90
reads,
94.0
reads per million, 2 experiments
ugagcuaagggcacagaaguagagccucacauggaggggugcaaugugcuagggUAGCCAAGGAUGACUUGCCUUugaucacaaugugugagagagugaaaugguucuccaccagugcuuuaugAGCAAGUCGCCUUGGCUAACCUaaggaucuugccucucauguuaggccuucucuucuuauuca
((((.((((((...(((((....((((.(((((..((((.((((.((.((.((((((((((((.(((((((((...((.(((..((.(((.(((((........))))))))))))).))...).)))))))))))))))).)))).)).)).))))))))))))).))))))))).))))))))))
((((.((((((...(((((....((((.(((((..((((.((((.((.((.((((((((((((.(((((((((...((.(((..((.(((.(((((........))))))))))))).))...).)))))))))))))))).)))).)).)).))))))))))))).))))))))).))))))))))
Structure
c cac uaga c ga u u g a - A - UUu u aa u a uga
ugag uaaggg agaag gccu acaug gggg gcaa gu cu gggU AGCCAAGG UGACUUGC C ga cac ug gug gagag a
|||| |||||| ||||| |||| ||||| |||| |||| || || |||| |||||||| |||||||| | || ||| || ||| |||||
acuu auucuu ucuuc cgga uguac ucuc cguu ua ga UCCA UCGGUUCC GCUGAACG g uu gug ac cac cucuu a
- --c ---- u -- - c g a A - A uau c -- - - ggu
Annotation confidence
High
Do you think this miRNA is real?
Genome context
scaffold00057: 2389278-2389464 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from atr-MIR169b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature atr-miR169b-5p
| Accession | MIMAT0061232 |
| Description | Amborella trichopoda atr-miR169b-5p mature miRNA |
| Sequence | 55 - UAGCCAAGGAUGACUUGCCUU - 75 |
| Evidence |
experimental
unknown |
Mature atr-miR169b-3p
| Accession | MIMAT0033922 |
| Description | Amborella trichopoda atr-miR169b-3p mature miRNA |
| Sequence | 125 - AGCAAGUCGCCUUGGCUAACCU - 146 |
| Evidence |
experimental
Illumina [1] |
References
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