Accession
MI0027522
Description
Amborella trichopoda
atr-MIR171a precursor miRNA
Sequence
2690
reads,
1923.0
reads per million, 2 experiments
agagggucuuuuggauacauugaaggaguuauuugCGAUGUUGGACCGGUUCAAUCagaaaacacugcccagaaauugcugggucgugugcuuUGAUUGAGCCGCGCCAAUAUCccagagcuucucaucuugucuuuucuaucucu
(((((.......(((((...(((.(((((..((((.((((((((..(((((((((((((..((((.((((((......)))))).))))..)))))))))))))..)))))))).))))))))))))...)))))......)))))
(((((.......(((((...(((.(((((..((((.((((((((..(((((((((((((..((((.((((((......)))))).))))..)))))))))))))..)))))))).))))))))))))...)))))......)))))
Structure
gucuuuu cau a ua C AC aa u aa
agagg ggaua uga ggagu uuug GAUGUUGG CGGUUCAAUCaga acac gcccag a
||||| ||||| ||| ||||| |||| |||||||| ||||||||||||| |||| ||||||
ucucu ucugu acu cuucg agac CUAUAACC GCCGAGUUAGUuu ugug uggguc u
-aucuuu ucu - -- c GC cg c gu
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
scaffold00001: 2643225-2643370 [-]
Database links
Mature atr-miR171a-5p
| Accession | MIMAT0058693 |
| Description | Amborella trichopoda atr-miR171a-5p mature miRNA |
| Sequence | 36 - CGAUGUUGGACCGGUUCAAUC - 56 |
| Evidence |
experimental
unknown |
Mature atr-miR171a-3p
| Accession | MIMAT0033924 |
| Description | Amborella trichopoda atr-miR171a-3p mature miRNA |
| Sequence | 94 - UGAUUGAGCCGCGCCAAUAUC - 114 |
| Evidence |
experimental
Illumina [1] |
References
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