Stem-loop atr-MIR171a

Accession

MI0027522

Description

Amborella trichopoda atr-MIR171a precursor miRNA

Sequence

2636 reads, 3894 reads per million, 4 experiments

agagggucuuuuggauacauugaaggaguuauuugcgauguuggaccgguucaaucagaaaacacugcccagaaauugcugggucgugugcuuUGAUUGAGCCGCGCCAAUAUCccagagcuucucaucuugucuuuucuaucucu
(((((.......(((((...(((.(((((..((((.((((((((..(((((((((((((..((((.((((((......)))))).))))..)))))))))))))..)))))))).))))))))))))...)))))......)))))

Structure

     gucuuuu     cau   a     ua    c        ac             aa    u      aa 
agagg       ggaua   uga ggagu  uuug gauguugg  cgguucaaucaga  acac gcccag  a
|||||       |||||   ||| |||||  |||| ||||||||  |||||||||||||  |||| ||||||   
ucucu       ucugu   acu cuucg  agac CUAUAACC  GCCGAGUUAGUuu  ugug uggguc  u
     -aucuuu     ucu   -     --    c        GC             cg    c      gu 

Annotation confidence Not enough data

Genome context

scaffold00001: 2643225-2643370 [-]

Mature atr-miR171a

• Accession: MIMAT0033924
• Description: Amborella trichopoda atr-miR171a mature miRNA
• Sequence: 94 - UGAUUGAGCCGCGCCAAUAUC - 114
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089