Stem-loop atr-MIR171b

Accession

MI0027523

Description

Amborella trichopoda atr-MIR171b precursor miRNA

Sequence

262 reads, 196.0 reads per million, 2 experiments

gguaugaaguugguuuucaugggaggaaggcgaaggggacucgguucgcgugCGGUGUUGGCACGGUUCAAUCUGacugcugcccugcuaguugugcaguaugguggugcgaUUGAGCCGUGCCAAUAUCACAcucaaucagccaucgaaucaagucuucuucuuccuccuccucuuccucuucuuauu
.(((.((((..((.......(((((((.((.((((((((((.((((((.(((.((((((((((((((((((((..(((((((..((((.......))))..)))))))..)))))))))))))))))))).)))............)))))).))))))))))..)))))))))...)).)))).))).

Structure

g   u    uu  uuuucau       a  -c          c      -----------c   C                    UG       cc    ua 
 gua gaag  gg       gggagga gg  gaaggggacu gguucg            gug GGUGUUGGCACGGUUCAAUC  acugcug  cugc  g
 ||| ||||  ||       ||||||| ||  |||||||||| ||||||            ||| ||||||||||||||||||||  |||||||  ||||  u
 uau cuuc  cc       uccuccu cc  cuucuucuga cuaagc            cAC CUAUAACCGUGCCGAGUUag  ugguggu  gacg  u
u   u    -u  ----uuc       -  uu          a      uaccgacuaacu   A                    cg       au    ug 

Annotation confidence High

Genome context

scaffold00060: 3430268-3430456 [+]

Mature atr-miR171b-5p

• Accession: MIMAT0061233
• Description: Amborella trichopoda atr-miR171b-5p mature miRNA
• Sequence: 53 - CGGUGUUGGCACGGUUCAAUCUG - 75
• Evidence: experimental ; unknown

Mature atr-miR171b-3p

• Accession: MIMAT0033925
• Description: Amborella trichopoda atr-miR171b-3p mature miRNA
• Sequence: 113 - UUGAGCCGUGCCAAUAUCACA - 133
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089