Accession
MI0027524
Description
Amborella trichopoda
atr-MIR171c precursor miRNA
Sequence
2382
reads,
1704.0
reads per million, 2 experiments
auugaaggaguucuugcgaCAUUGGCCCGGUUCGAUCAGAgaugaaaaugccaaggaaagaaauggauguuugguuuacucUGAUUGAGCCGCGCCAAUAUCaaagagcuucucaau
(((((.(((((((((..((.((((((.((((((((((((((.(((....((((((.(..........).))))))))))))))))))))))).)))))).)).))))))))))))))
(((((.(((((((((..((.((((((.((((((((((((((.(((....((((((.(..........).))))))))))))))))))))))).)))))).)).))))))))))))))
Structure
a gc C C a aaau g aaga
auuga ggaguucuu ga AUUGGC CGGUUCGAUCAGAg uga gccaag a a
||||| ||||||||| || |||||| |||||||||||||| ||| |||||| |
uaacu cuucgagaa CU UAACCG GCCGAGUUAGUcuc auu ugguuu u a
- -a A C - ---- g aggu
Annotation confidence
High
Do you think this miRNA is real?
Genome context
scaffold00088: 670603-670719 [-]
Database links
Mature atr-miR171c-5p
| Accession | MIMAT0061234 |
| Description | Amborella trichopoda atr-miR171c-5p mature miRNA |
| Sequence | 20 - CAUUGGCCCGGUUCGAUCAGA - 40 |
| Evidence |
experimental
unknown |
Mature atr-miR171c-3p
| Accession | MIMAT0033926 |
| Description | Amborella trichopoda atr-miR171c-3p mature miRNA |
| Sequence | 82 - UGAUUGAGCCGCGCCAAUAUC - 102 |
| Evidence |
experimental
Illumina [1] |
References
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