Stem-loop atr-MIR172

Accession

MI0027525

Description

Amborella trichopoda atr-MIR172 precursor miRNA

Literature search

1 open access papers mention atr-MIR172
(2 sentences)

Sequence

118 reads, 96.0 reads per million, 2 experiments

guuguuuguuugaugcaugggguagaagagagagaaaagaagaaaaaagaggaggaggaggaggauaucagucaguguuugcugguGUAGCAUCAUCAAGAUUCACAUcuuguaagagaucccuuugaaucggugggaucacacuucacuacauaagaucacgauuuagagagggaaagcugaccauaagaugGGAAUCUUGAUGAUGCUGCAUcggcaauaagugacuuuguguuucaccguucguugccacccucauuugcacucuccucggcaaaggugagagaaacagaggac
(((.(((((((....(((...((.((.(((((...(((..((......((.(((..((.((((.(((..(((((.(..((((((((((((((((((((((((((.((((((((...((.(((((((((((((((((((.......)).)))).........)))))))..))))))...))....)))))))).))))))))))))))))))))))))))..).))))).))).)))).)).))).))......))..)))...))))).)).))....)))....))))))).)))

Structure

   g       gaug   -ggg  a  a     aga   ga  aaaaaa  g   ga  a    g   uc     g gu                          A        -aag  --a      --       ---------    -  uc 
guu uuuguuu    cau    gu ga gagag   aaa  ag      ga gag  gg ggag aua  aguca u  uugcugguGUAGCAUCAUCAAGAUUC CAUcuugu    ag   ucccuu  ugaaucg         gugg ga  a
||| |||||||    |||    || || |||||   |||  ||      || |||  || |||| |||  ||||| |  |||||||||||||||||||||||||| ||||||||    ||   ||||||  |||||||         |||| ||  c
cag agacaaa    gug    cg cu cucuc   uuu  uc      uu cuu  cc cuuu ugu  ucagu a  aacggcUACGUCGUAGUAGUUCUAAG guagaaua    uc   agggag  auuuagc         cauc cu  a
   g       gaga   gaaa  g  c     acg   ac  ccaccg  g   -g  a    g   -u     g au                          G        ccag  gaa      ag       acuagaaua    a  uc 

Annotation confidence High

Genome context

scaffold00012: 6005508-6005804 [+]

Mature atr-miR172-5p

• Accession: MIMAT0061235
• Description: Amborella trichopoda atr-miR172-5p mature miRNA
• Sequence: 87 - GUAGCAUCAUCAAGAUUCACAU - 108
• Evidence: experimental ; unknown

Mature atr-miR172-3p

• Accession: MIMAT0033927
• Description: Amborella trichopoda atr-miR172-3p mature miRNA
• Sequence: 194 - GGAAUCUUGAUGAUGCUGCAU - 214
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089