Accession
MI0027525
Description
Amborella trichopoda
atr-MIR172 precursor miRNA
Literature search
1 open access papers mention atr-MIR172
(1 sentences)
(1 sentences)
Sequence
113
reads,
793
reads per million, 4 experiments
guuguuuguuugaugcaugggguagaagagagagaaaagaagaaaaaagaggaggaggaggaggauaucagucaguguuugcugguguagcaucaucaagauucacaucuuguaagagaucccuuugaaucggugggaucacacuucacuacauaagaucacgauuuagagagggaaagcugaccauaagaugGGAAUCUUGAUGAUGCUGCAucggcaauaagugacuuuguguuucaccguucguugccacccucauuugcacucuccucggcaaaggugagagaaacagaggac
(((.(((((((....(((...((.((.(((((...(((..((......((.(((..((.((((.(((..(((((.(..((((((((((((((((((((((((((.((((((((...((.(((((((((((((((((((.......)).)))).........)))))))..))))))...))....)))))))).))))))))))))))))))))))))))..).))))).))).)))).)).))).))......))..)))...))))).)).))....)))....))))))).)))
(((.(((((((....(((...((.((.(((((...(((..((......((.(((..((.((((.(((..(((((.(..((((((((((((((((((((((((((.((((((((...((.(((((((((((((((((((.......)).)))).........)))))))..))))))...))....)))))))).))))))))))))))))))))))))))..).))))).))).)))).)).))).))......))..)))...))))).)).))....)))....))))))).)))
Structure
g gaug -ggg a a aga ga aaaaaa g ga a g uc g gu a -aag --a -- --------- - uc guu uuuguuu cau gu ga gagag aaa ag ga gag gg ggag aua aguca u uugcugguguagcaucaucaagauuc caucuugu ag ucccuu ugaaucg gugg ga a ||| ||||||| ||| || || ||||| ||| || || ||| || |||| ||| ||||| | |||||||||||||||||||||||||| |||||||| || |||||| ||||||| |||| || c cag agacaaa gug cg cu cucuc uuu uc uu cuu cc cuuu ugu ucagu a aacggcuACGUCGUAGUAGUUCUAAG guagaaua uc agggag auuuagc cauc cu a g gaga gaaa g c acg ac ccaccg g -g a g -u g au G ccag gaa ag acuagaaua a uc
Annotation confidence
High
Do you think this miRNA is real?
Genome context
scaffold00012: 6005508-6005804 [+]
Database links
Mature atr-miR172
| Accession | MIMAT0033927 |
| Description | Amborella trichopoda atr-miR172 mature miRNA |
| Sequence | 194 - GGAAUCUUGAUGAUGCUGCA - 213 |
| Evidence |
experimental
Illumina [1] |
References
|
