Stem-loop atr-MIR395

Accession

MI0027534

Description

Amborella trichopoda atr-MIR395 precursor miRNA

Sequence

316 reads, 213 reads per million, 4 experiments

gcauugggagaccccuagaguucccucaaccccuucagcgaugugcucucuccuauacaagagagagagagaguuuaugcugguguuuuggagagagaguuuacgCUGAAGUGUUUGGGGGAACUCcuggagucacucaauagu
..((((((.(((.((..((((((((((((.(.((((((((.((.(((((((((((.(((..((...(((....)))...))..)))..))).)))))))).)))))))))).).))))))))))))..)).))).))))))...

Structure

-gc      a   c  ua            c c        a  u        -   -u   ag  aga   a 
   auuggg gac cc  gaguucccucaa c cuucagcg ug gcucucuc cua  aca  ag   gag g
   |||||| ||| ||  |||||||||||| | |||||||| || |||||||| |||  |||  ||   |||  
   uaacuc cug gg  CUCAAGGGGGUU G GAAGUCgc au ugagagag ggu  ugu  uc   uuu a
uga      a   a  uc            U U        -  u        a   uu   gg  gua   g 

Annotation confidence Not enough data

Genome context

scaffold00060: 2574005-2574148 [+]

Mature atr-miR395

• Accession: MIMAT0033937
• Description: Amborella trichopoda atr-miR395 mature miRNA
• Sequence: 106 - CUGAAGUGUUUGGGGGAACUC - 126
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089