Stem-loop atr-MIR396b

Accession

MI0027536

Description

Amborella trichopoda atr-MIR396b precursor miRNA

Sequence

14503 reads, 5856 reads per million, 4 experiments

uggugaaaauuuuggaauccaucguauuuUUCCACAGCUUUCUUGAACUUuauuaauaugagaagauugccgcuucguaaugcaaagcggaauauggaagaaaaagcucaagaaagcugugggaaaacaugaauguauucugguuaucg
.(((((.....(((((((.((((((.((((((((((((((((((((.((((.((..((((.........((((((.((...)).))))))..))))...)).)))).)))))))))))))))))))).))).))).)))))))))))).

Structure

u     aaauu       c   -   a                    A    a  -aa    agaagauug      c  a 
 gguga     uuggaau cau cgu uuuUUCCACAGCUUUCUUGA CUUu uu   uaug         ccgcuu gu  
 |||||     ||||||| ||| ||| |||||||||||||||||||| |||| ||   ||||         |||||| || a
 cuauu     ggucuua gua gua aaaagggugucgaaagaacu gaaa ag   guau         ggcgaa cg  
g     -----       u   a   c                    c    a  aag    -------aa      a  u 

Annotation confidence Not enough data

Genome context

scaffold00014: 2855195-2855343 [+]

Mature atr-miR396b

• Accession: MIMAT0033939
• Description: Amborella trichopoda atr-miR396b mature miRNA
• Sequence: 30 - UUCCACAGCUUUCUUGAACUU - 50
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089