Stem-loop atr-MIR396b

Accession

MI0027536

Description

Amborella trichopoda atr-MIR396b precursor miRNA

Sequence

85073 reads, 121116.0 reads per million, 2 experiments

uggugaaaauuuuggaauccaucguauuuUUCCACAGCUUUCUUGAACUuuauuaauaugagaagauugccgcuucguaaugcaaagcggaauauggaagaaaaagCUCAAGAAAGCUGUGGGAAAacaugaauguauucugguuaucg
.(((((.....(((((((.((((((.((((((((((((((((((((.((((.((..((((.........((((((.((...)).))))))..))))...)).)))).)))))))))))))))))))).))).))).)))))))))))).

Structure

u     aaauu       c   -   a                    A    a  -aa    agaagauug      c  a 
 gguga     uuggaau cau cgu uuuUUCCACAGCUUUCUUGA CUuu uu   uaug         ccgcuu gu  
 |||||     ||||||| ||| ||| |||||||||||||||||||| |||| ||   ||||         |||||| || a
 cuauu     ggucuua gua gua aAAAGGGUGUCGAAAGAACU gaaa ag   guau         ggcgaa cg  
g     -----       u   a   c                    C    a  aag    -------aa      a  u 

Annotation confidence High

Genome context

scaffold00014: 2855195-2855343 [+]

Mature atr-miR396b-5p

• Accession: MIMAT0033939
• Description: Amborella trichopoda atr-miR396b-5p mature miRNA
• Sequence: 30 - UUCCACAGCUUUCUUGAACU - 49
• Evidence: experimental ; Illumina [1]

Mature atr-miR396b-3p

• Accession: MIMAT0058696
• Description: Amborella trichopoda atr-miR396b-3p mature miRNA
• Sequence: 107 - CUCAAGAAAGCUGUGGGAAA - 126
• Evidence: experimental ; unknown

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089