Accession
MI0027537
Description
Amborella trichopoda
atr-MIR396c precursor miRNA
Sequence
72557
reads,
105812.0
reads per million, 2 experiments
gagagaguggggcauguaaagagcaaugugguggaagagauggagagagaauuggaaguccugucaugcuuUUCCACAGCUUUCUUGAACUucuuuaguccuugaauggcaucuagaagUUCAAGGAAGUUGUGGGAAAccauggcaauaaggauuuuuuaauugcaggagcaccccaccuuuc
(((((.((((((..(((.....(((((..........................(((((((((((((((.(((((((((((((((((((((((((.....((......)).....))))))))))))))))))))))))).))))))....)))))))))..)))))....))))))))))))))
(((((.((((((..(((.....(((((..........................(((((((((((((((.(((((((((((((((((((((((((.....((......)).....))))))))))))))))))))))))).))))))....)))))))))..)))))....))))))))))))))
Structure
a ca aaaga gugguggaagagauggagagagaauu ---- c uuagu uu
gagag gugggg ugu gcaau ggaaguccu gucaug uuUUCCACAGCUUUCUUGAACUucu cc g
||||| |||||| ||| ||||| ||||||||| |||||| ||||||||||||||||||||||||| ||
cuuuc cacccc acg cguua uuuuuagga cgguac AAAGGGUGUUGAAGGAACUUgaaga gg a
- -- -agga ------------------------au auaa c ucuac ua
Annotation confidence
High
Do you think this miRNA is real?
Genome context
scaffold00046: 1545633-1545816 [+]
Database links
Mature atr-miR396c-5p
| Accession | MIMAT0033940 |
| Description | Amborella trichopoda atr-miR396c-5p mature miRNA |
| Sequence | 72 - UUCCACAGCUUUCUUGAACU - 91 |
| Evidence |
experimental
Illumina [1] |
Mature atr-miR396c-3p
| Accession | MIMAT0058697 |
| Description | Amborella trichopoda atr-miR396c-3p mature miRNA |
| Sequence | 120 - UUCAAGGAAGUUGUGGGAAA - 139 |
| Evidence |
experimental
unknown |
References
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