miRBase entry: atr-MIR396d

Stem-loop atr-MIR396d


Accession
MI0027538
Description
Amborella trichopoda atr-MIR396d precursor miRNA


Sequence

2929 reads, 2532 reads per million, 4 experiments
auggugguuuaaggaaacaaggaggaagguuuagggcuuuuuauuggcaaauauggaagguuuaucucaacugauggcuucaugcuuCUCCACGGCUUUCUUGAACUUaguuugaauaaggugagccuucuuacaagaucaagaaagcugcggaaaaacauagauccacucaaaauuaugaacuuucaacagagagauagaucuccaagguaaguuaucuagccauugu
(((((((((........(((..((((((........)))))).))).......((((.((((((((((...((((((..(((((.((.(((.((((((((((((.(((.((..((...(((....)))))..))))).)))))))))))).))).)).))).)).))).)))......(((....))).....))))))))))))))(((((...))))))))))))))

Structure
         uaaggaaacaaggaggaagguuuagggcuuuuuauuggcaaaua    a          ------------------aac   -   cu  -   c  C   A            A   a  uu  aua   u 
auggugguu                                            ugga gguuuaucuc                     uga ugg  uc aug uu UCC CGGCUUUCUUGA CUU gu  ga   agg g
|||||||||                                            |||| ||||||||||                     ||| |||  || ||| || ||| |||||||||||| ||| ||  ||   |||  
uguuaccga                                            accu cuagauagag                     acu acc  ag uac aa agg gucgaaagaacu gaa ca  cu   ucc a
         -------------------------------ucuauugaaugga    -          agacaacuuucaaguauuaaa   c   -u  a   a  a   c            a   -  uu  ---   g 


Annotation confidence Not enough data
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Genome context
scaffold00090: 1850377-1850605 [-]

Database links

Mature atr-miR396d

Accession MIMAT0033941
Description Amborella trichopoda atr-miR396d mature miRNA
Sequence 88 - CUCCACGGCUUUCUUGAACUU - 108
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089