Stem-loop atr-MIR396e

Accession

MI0027539

Description

Amborella trichopoda atr-MIR396e precursor miRNA

Literature search

1 open access papers mention atr-MIR396e
(1 sentences)

Sequence

73031 reads, 106506.0 reads per million, 2 experiments

uuUUCCACAGCUUUCUUGAACUUguuacucaacaaugcaucuccgagaaccaacucgaggagggccugucugaauaccauguUCAAGAAAGCCUGUGGAAAg
.((((((((((((((((((((.((.((.((((((..((.(((((..((......))..))))))).))).))).)).)).))))))))))).))))))))).

Structure

u         -           U  u  c   -   au  a     ga  ac 
 uUUCCACAG CUUUCUUGAAC Ug ua uca aca  gc ucucc  ga  c
 ||||||||| ||||||||||| || || ||| |||  || |||||  ||   
 AAAGGUGUC GAAAGAACUug ac au agu ugu  cg ggagg  cu  a
g         C           u  c  a   c   -c  -     ag  ca 

Annotation confidence Not enough data

Genome context

scaffold02939: 2915-3016 [+]

Mature atr-miR396e-5p

• Accession: MIMAT0033942
• Description: Amborella trichopoda atr-miR396e-5p mature miRNA
• Sequence: 3 - UUCCACAGCUUUCUUGAACUU - 23
• Evidence: experimental ; Illumina [1]

Mature atr-miR396e-3p

• Accession: MIMAT0058698
• Description: Amborella trichopoda atr-miR396e-3p mature miRNA
• Sequence: 83 - UCAAGAAAGCCUGUGGAAA - 101
• Evidence: experimental ; unknown

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089