Accession
MI0027540
Description
Amborella trichopoda
atr-MIR397a precursor miRNA
Sequence
2264
reads,
3484.0
reads per million, 2 experiments
aaccaauuucaugcuugaggaggcccaauggggagaaaaaccauacacaUCCUUGAGUGCAGCGUUGAUGaacccaaaacccuaauuucaGCAGCGCUGUACUCAAUGAUGccuuugguauuucauguaauuuuucucuuauuccuuuuuuugguu
((((((...........(((((((((....))).((((.((((....((((.(((((((((((((((.((((..............)))).))))))))))))))).))))....)))).))))..........))))))..........))))))
((((((...........(((((((((....))).((((.((((....((((.(((((((((((((((.((((..............)))).))))))))))))))).))))....)))).))))..........))))))..........))))))
Structure
uuucaugcuug cccaaugggga a uaca C A cccaaa
aaccaa aggagg gaaa acca caUC UUGAGUGCAGCGUUG UGaa a
|||||| |||||| |||| |||| |||| ||||||||||||||| ||||
uugguu uucucu cuuu uggu GUAG AACUCAUGUCGCGAC acuu c
-uuuuuccuua -uuuuaaugua a uucc U G uaaucc
Annotation confidence
High
Do you think this miRNA is real?
Genome context
scaffold00016: 5120337-5120492 [-]
Database links
Mature atr-miR397a-5p
| Accession | MIMAT0033943 |
| Description | Amborella trichopoda atr-miR397a-5p mature miRNA |
| Sequence | 50 - UCCUUGAGUGCAGCGUUGAUG - 70 |
| Evidence |
experimental
Illumina [1] |
Mature atr-miR397a-3p
| Accession | MIMAT0058699 |
| Description | Amborella trichopoda atr-miR397a-3p mature miRNA |
| Sequence | 91 - GCAGCGCUGUACUCAAUGAUG - 111 |
| Evidence |
experimental
unknown |
References
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