Stem-loop atr-MIR398

Accession

MI0027542

Description

Amborella trichopoda atr-MIR398 precursor miRNA

Sequence

20097 reads, 30598.0 reads per million, 2 experiments

agcccaaauucgaagaagcaucagaauggggaagucucaacaggAGCGAUAUGAGAACACACAAUcauaugcauaaauauuguguaugugugugugcacgugugcaugugcaugugcgugcuugUGUGUUCCCAGGUCGCCCCUGccgagccugcccauaucuauaaauaauucuucuugcugcu
(((.(((....((((((.....((((((((.(.(.(((..((((.(((((.((.((((((((((.(((((((((((...))))))))))).((((((((((((......)))))))))))))))))))))).)).))))).))))..)))).).))))).)))........)))))))))..)))

Structure

   -c   auuc      ---gcauc   -     g a u   aa    A     A  A          Ucauaugcauaaauauuguguaugugu            gc 
agc  caa    gaagaa        aga auggg a g cuc  cagg GCGAU UG GAACACACAA                           gugugcacgugu  a
|||  |||    ||||||        ||| ||||| | | |||  |||| ||||| || ||||||||||                           ||||||||||||   
ucg  guu    cuucuu        ucu uaccc u c gag  GUCC CGCUG AC CUUGUGUguu                           cgugcguguacg  u
   uc   ----      aauaaaua   a     g c -   cc    C     G  C          ---------------------------            ug 

Annotation confidence High

Genome context

scaffold00102: 1169815-1169999 [+]

Mature atr-miR398-5p

• Accession: MIMAT0061217
• Description: Amborella trichopoda atr-miR398-5p mature miRNA
• Sequence: 45 - AGCGAUAUGAGAACACACAAU - 65
• Evidence: experimental ; unknown

Mature atr-miR398-3p

• Accession: MIMAT0033945
• Description: Amborella trichopoda atr-miR398-3p mature miRNA
• Sequence: 125 - UGUGUUCCCAGGUCGCCCCUG - 145
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089