Accession
MI0027546
Description
Amborella trichopoda
atr-MIR8558b precursor miRNA
Sequence
23641
reads,
20839.0
reads per million, 2 experiments
gugcgaagggggcucuugcaggcggaggacaugguggaauggugaagaggcgguaugguagccguuggugUAUGGCUGGGCAGAAUUUGGAAacccuaguuuugguuuuuacgggaaaccaggauuaggaaacucuaauuuuggcucuuaccggaaauccaguauuaggagaaccuaauuugggugucuuacaggaaaccaugguUUCCGAUCCCGCCCAUGCcguguacccauggcuucuauccccuuuucauaacccacuuaaguuucccgaucccgcccuugccguuuacgcac
(((((.(((.(((....((.(((((.((((..(((((....(((((((((.((.((((.((((((.(((((((((((((((.....((((((((((((((((((((((((...))))))))))))))))............(((.((((...(((.((((((.((((((....)))))))))))).)))...))))..)))..))))))))....))))).)))))))))).)))))).)))))))))))))))...)))))...)))).)))..)).))....))).))).)))))
(((((.(((.(((....((.(((((.((((..(((((....(((((((((.((.((((.((((((.(((((((((((((((.....((((((((((((((((((((((((...))))))))))))))))............(((.((((...(((.((((((.((((((....)))))))))))).)))...))))..)))..))))))))....))))).)))))))))).)))))).)))))))))))))))...)))))...)))).)))..)).))....))).))).)))))
Structure
a g ucuu a -- a -au aaug c u u u - AGAAU ccuaguuuugguuuuuacgggaaaccaggauuaggaaacucuaauuu -c acc a u a
gugcg agg ggc gc gg cgg ggac ggugg gugaagagg gg augg agccgu ggugUAUGGC UGGGC UUGGAAac ugg ucuu gga auccag auuagg g
||||| ||| ||| || || ||| |||| ||||| ||||||||| || |||| |||||| |||||||||| ||||| |||||||| ||| |||| ||| |||||| ||||||
cacgc uuu ccg cg cc gcc uuug ucacc uacuuuucc cc uauc ucggua ccaugugcCG ACCCG AGCCUUug acc agga ucu uggguu uaaucc a
a g uucc c ua c aau -caa - - u c U -CCCU ---------------------------------------------gu aa cau g - a
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
scaffold00017: 2879753-2880049 [+]
Database links
Mature atr-miR8558b-5p
| Accession | MIMAT0061219 |
| Description | Amborella trichopoda atr-miR8558b-5p mature miRNA |
| Sequence | 71 - UAUGGCUGGGCAGAAUUUGGAA - 92 |
| Evidence |
experimental
unknown |
Mature atr-miR8558b-3p
| Accession | MIMAT0033949 |
| Description | Amborella trichopoda atr-miR8558b-3p mature miRNA |
| Sequence | 206 - UUCCGAUCCCGCCCAUGC - 223 |
| Evidence |
experimental
Illumina [1] |
References
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