Stem-loop atr-MIR8615

Accession

MI0027547

Description

Amborella trichopoda atr-MIR8615 precursor miRNA

Sequence

7843 reads, 10629.0 reads per million, 2 experiments

gcucgcgaaauucacaacuacaacgaauggcgUUUGUGCGUAGAAUCAUACCUgcaaagacaaaaccucugggagguauuagcgccgugggacaauaccuuugcaaggacaagaccucuuggagguagaaacaugacCUUGUAGGUAUGAUUCCACGCAcgaacgccauucguuuugacggc
((.((((((.............(((((((((((((((((((.(((((((((((((((.(.((..(((((((((((((.......((.((.((........)).)).)).....))))))))))))).......)).).))))))))))))))).))))))))))))))))))))))).))))

Structure

  u  -    auucacaacuaca                   A               a a  -----aa             auuagcg  g  g  caa 
gc cg cgaa             acgaauggcgUUUGUGCGU GAAUCAUACCUgcaa g ca       accucugggaggu       cc ug ga   u
|| || ||||             ||||||||||||||||||| ||||||||||||||| | ||       |||||||||||||       || || ||    
cg gc guuu             ugcuuaccgcaagcACGCA CUUAGUAUGGAUGUU c gu       uggagguucucca       gg ac uu   a
  -  a    -------------                   C               C a  acaaaga             --gaaca  a  g  ucc 

Annotation confidence Medium

Genome context

scaffold00069: 1966180-1966361 [-]

Mature atr-miR8615-5p

• Accession: MIMAT0058703
• Description: Amborella trichopoda atr-miR8615-5p mature miRNA
• Sequence: 33 - UUUGUGCGUAGAAUCAUACCU - 53
• Evidence: experimental ; unknown

Mature atr-miR8615-3p

• Accession: MIMAT0033950
• Description: Amborella trichopoda atr-miR8615-3p mature miRNA
• Sequence: 138 - CUUGUAGGUAUGAUUCCACGCA - 159
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089