Stem-loop atr-MIR2950

Accession

MI0027548

Description

Amborella trichopoda atr-MIR2950 precursor miRNA

Sequence

2094 reads, 2902.0 reads per million, 2 experiments

uugugguuuaUUCCAUCUCUUGCACACUGGAccagugcuucagcaacugguUGGUGUGCAGGGGGUGGAAUauggcaccc
..(((.(.(((((((((((((((((((..(((((((((....)).))))))).))))))))))))))))))).).)))..

Structure

uu   g u                   UG       -  u 
  gug u uaUUCCAUCUCUUGCACAC  GAccagu gc u
  ||| | |||||||||||||||||||  ||||||| ||  
  cac g aUAAGGUGGGGGACGUGUG  Uugguca cg c
cc   g u                   -G       a  a 

Annotation confidence High

Genome context

scaffold00059: 4206332-4206411 [-]

Mature atr-miR2950-5p

• Accession: MIMAT0033951
• Description: Amborella trichopoda atr-miR2950-5p mature miRNA
• Sequence: 11 - UUCCAUCUCUUGCACACUGGA - 31
• Evidence: experimental ; Illumina [1]

Mature atr-miR2950-3p

• Accession: MIMAT0058704
• Description: Amborella trichopoda atr-miR2950-3p mature miRNA
• Sequence: 52 - UGGUGUGCAGGGGGUGGAAU - 71
• Evidence: experimental ; unknown

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089