Stem-loop esi-MIR8625

Accession

MI0027559

Description

Ectocarpus siliculosus esi-MIR8625 precursor miRNA

Sequence

cgcaaauccaggccaucuugguucggacucaggaggaaugauauccgucauacgaaccccggaucacggacgaggguuucgugaugucgucaggacggaagcuucccuauuggcgagaucgcgcccccuccuccgugacccggacgucguaugacgagucauuccuccggaacccaAACCAAGAUGGCCUGGAUUUGCG
(((((((((((((((((((((((.((..((.(((((((((((...((((((((((...((((.(((((((.(((((...((((((.(((((((...(((....)))...))))))).))))))..))))).))))))).))))...)))))))))).))))))))))).))..)).)))))))))))))))))))))))

Structure

                       c  ac  a           auc          acc    a       c     uuu      g       gac   a 
cgcaaauccaggccaucuugguu gg  uc ggaggaaugau   cgucauacga   ccgg ucacgga gaggg   cgugau ucgucag   gga g
||||||||||||||||||||||| ||  || |||||||||||   ||||||||||   |||| ||||||| |||||   |||||| |||||||   |||  
GCGUUUAGGUCCGGUAGAACCAA cc  ag ccuccuuacug   gcaguaugcu   ggcc agugccu cuccc   gcgcua agcgguu   ccu c
                       a  ca  g           --a          gca    c       c     -cc      g       auc   u 

Annotation confidence Low

Genome context

sctg_9: 621989-622187 [-]

Mature esi-miR8625

• Accession: MIMAT0033962
• Description: Ectocarpus siliculosus esi-miR8625 mature miRNA
• Sequence: 177 - AACCAAGAUGGCCUGGAUUUGCG - 199
• Evidence: experimental ; qPCR [1]

References

1. PubMed ID: 24078085
   Computational prediction and experimental validation of microRNAs in the brown alga Ectocarpus siliculosus
   "Billoud B, Nehr Z, Le Bail A, Charrier B"
   "Nucleic Acids Res (2014) 42:417-429