Stem-loop esi-MIR8628

Accession

MI0027563

Description

Ectocarpus siliculosus esi-MIR8628 precursor miRNA

Sequence

uauagaagccgaaaucaaaccauuagacuacuagucaaugguuugauuucggcuucaauaaaaguuaguugugggguucgugaccuuuUAUAGAAGCCGAAAUCAAAccauugacuagucagcgcugacuagucuaaugguuugauuucggcuuuuaua
((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((((((...((((((.....))))))))))))).)))))))))))))))))))))))))))...........)))))))))))))))))))))))))))))

Structure

                             -----------                           a       uua      g 
uauagaagccgaaaucaaaccauuagacu           acuagucaaugguuugauuucggcuuc auaaaag   guugug g
|||||||||||||||||||||||||||||           ||||||||||||||||||||||||||| |||||||   |||||| g
auauuuucggcuuuaguuugguaaucuga           ugaucaguuaccAAACUAAAGCCGAAG UAUuuuc   cagugc u
                             ucagucgcgac                           A       ---      u 

Annotation confidence Low

Genome context

sctg_214: 74524-74682 [+]

Mature esi-miR8628

• Accession: MIMAT0033966
• Description: Ectocarpus siliculosus esi-miR8628 mature miRNA
• Sequence: 89 - UAUAGAAGCCGAAAUCAAA - 107
• Evidence: experimental ; qPCR [1]

References

1. PubMed ID: 24078085
   Computational prediction and experimental validation of microRNAs in the brown alga Ectocarpus siliculosus
   "Billoud B, Nehr Z, Le Bail A, Charrier B"
   "Nucleic Acids Res (2014) 42:417-429