Stem-loop cfa-mir-8799e-1

Accession

MI0027967

Description

Canis familiaris cfa-mir-8799e-1 precursor miRNA

Sequence

ccuggccucugccugucccggggggaaaucggauccugggcuguguccgccggcgcccugggcuccuaggccugCGCUGUUGGAAUCGCGCUCCUGGCcgugcagcccccuccguggagccacgcccgagccc
...(((.((.((.((((((((((((....(((..((.((((.(((((((.((((((...(((((....))))))))))).))))..))))).)).))))).......))))))).)))..)).))..))))).

Structure

ccu   c  -u  c  --   -       ---aaau   au  u  -  u   --    c      ccu     c 
   ggc uc  gc ug  ucc cgggggg       cgg  cc gg gc gug  uccg cggcgc   gggcu c
   ||| ||  || ||  ||| |||||||       |||  || || || |||  |||| ||||||   |||||  
   ccg ag  cg ac  agg gccuccc       gcC  GG CC CG CGC  AGGU GUCGCg   uccgg u
--c   -  cc  c  cg   u       ccgacgu   --  U  U  -   UA    U      ---     a 

Annotation confidence Not enough data

Genome context

chr6: 41017022-41017154 [+]

Mature cfa-miR-8799e

• Accession: MIMAT0034371
• Description: Canis familiaris cfa-miR-8799e mature miRNA
• Sequence: 75 - CGCUGUUGGAAUCGCGCUCCUGGC - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545