miRBase entry: eca-mir-8948

Stem-loop eca-mir-8948


Accession
MI0028095
Description
Equus caballus eca-mir-8948 precursor miRNA


Sequence

17 reads, 5.0 reads per million, 7 experiments
cccucaccccacuuagacagggcauguucuUGGUGUUGGAAGCCAGGCCCGGAGuugccagcacuggccuggacuguggcugaccugguccucccugagcuggggagaagggagggaggugcu
(((((.((((((((((..(((((..(...(((((......(((((((((.((.(((...))).))))))))).))...))))).)..)))))..))))).))))).).))))...........

Structure
-----------    - a     -     ac     au uuc     GUUGGA  -       C  A   g 
           cccu c cccca cuuag  agggc  g   uUGGU      AG CCAGGCC GG Guu  
           |||| | ||||| |||||  |||||  |   |||||      || ||||||| || ||| c
           ggga g ggggu gaguc  uccug  c   agucg      uc gguccgg uc cga  
ucguggaggga    a a     c     cc     gu --c     ---gug  a       -  a   c 


Annotation confidence Not enough data
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Genome context
23: 50149039-50149161 [-]

Database links

Mature eca-miR-8948-5p

Accession MIMAT0034477
Description Equus caballus eca-miR-8948-5p mature miRNA
Sequence 31 - UGGUGUUGGAAGCCAGGCCCGGAG - 54
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545