Stem-loop eca-mir-8979

Accession

MI0028135

Description

Equus caballus eca-mir-8979 precursor miRNA

Sequence

60 reads, 9 reads per million, 1 experiments

aucccaggagugucccgaccgucaccacuccuggggugccUGCUGGCUGUGGAACAGAGUCCUGUgcucugggccuuggcugcuguggacauugggccagggucaggaucaggguggggguggggcaguauugauaccucugaga
.((.((((.(((((...((.(((.((((((((......((((((((((.(((..(((.((((...((....(((....)))))...)))).)))..))).))))))...))))..))))))))))).))...))))).)))).))

Structure

a  c    a     ccg  c   a        ggggug    ---      G   AA   A    UGU  ucug   c 
 uc cagg guguc   ac guc ccacuccu      ccUG   CUGGCU UGG  CAG GUCC   gc    ggc u
 || |||| |||||   || ||| ||||||||      ||||   |||||| |||  ||| ||||   ||    |||  
 ag gucu cauag   ug cgg gguggggg      ggac   gacugg acc  guu cagg   cg    ucg u
-  a    c     uua  a   -        ----ug    uag      g   gg   a    ugu  ----   g 

Annotation confidence Not enough data

Genome context

chr6: 24386894-24387038 [+]

Mature eca-miR-8979

• Accession: MIMAT0034516
• Description: Equus caballus eca-miR-8979 mature miRNA
• Sequence: 41 - UGCUGGCUGUGGAACAGAGUCCUGU - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545