Stem-loop eca-mir-8994

Accession

MI0028152

Description

Equus caballus eca-mir-8994 precursor miRNA

Sequence

58 reads, 9 reads per million, 1 experiments

gggcgacgugucgugguaguuggccguguugaugaccgucUCCCCGCUCUUGAUGCGCGUGCGCAgaucguacuugacgauguugcgcgugcgcuccuuguuguagaagacggcaccgucguagaccacgaagcccgugccaucc
.(((.(((..(((((((...((((.(((.......((((((....((.(..(..(((((((((((((((((.....))))).))))))))))))..)..)..))...))))))))).))))...)))))))....))))))....

Structure

---g   g   --ug       agu    c   uugauga      CCCC  -U UU AU            -     a 
    ggc acg    ucguggu   uggc gug       ccgucU    GC  C  G  GCGCGUGCGCAg aucgu c
    ||| |||    |||||||   |||| |||       ||||||    ||  |  |  |||||||||||| ||||| u
    ccg ugc    agcacca   gcug cac       ggcaga    ug  g  c  cgcgugcgcguu uagca u
ccua   -   ccga       gau    c   -------      -aga  uu uu cu            g     g 

Annotation confidence Not enough data

Genome context

chr7: 44729010-44729154 [-]

Mature eca-miR-8994

• Accession: MIMAT0034533
• Description: Equus caballus eca-miR-8994 mature miRNA
• Sequence: 41 - UCCCCGCUCUUGAUGCGCGUGCGCA - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545