Stem-loop eca-mir-9052-1

Accession

MI0028222

Description

Equus caballus eca-mir-9052-1 precursor miRNA

Sequence

748 reads, 113 reads per million, 1 experiments

agccgugacucuccccaguggucucCCGAGACGCCGUCAGCAUGAGCCUCucggcagcgguggcugaggggccgcagcguguuggacucacugccgcgcuuggagacgaggagga
.........(((((....(.((((((.(((.(((.(.(((..((((..((.(((((((.((((((....)))))).)).))))))))))))))).)))))))))))).)))))).

Structure

agccgugac     ccag g      C   A   C U   CA    CC  u     -  g      g 
         ucucc    u gucucC GAG CGC G CAG  UGAG  UC cggca gc guggcu a
         |||||    | |||||| ||| ||| | |||  ||||  || ||||| || ||||||  
         ggagg    a cagagg uuc gcg c guc  acuc  ag guugu cg cgccgg g
--------a     ---- g      -   -   c -   --    --  -     g  a      g 

Annotation confidence Not enough data

Genome context

chr1: 36456271-36456385 [+]

Mature eca-miR-9052

• Accession: MIMAT0034596
• Description: Equus caballus eca-miR-9052 mature miRNA
• Sequence: 26 - CCGAGACGCCGUCAGCAUGAGCCUC - 50
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545