Stem-loop eca-mir-9054

Accession

MI0028225

Description

Equus caballus eca-mir-9054 precursor miRNA

Sequence

129 reads, 20 reads per million, 1 experiments

ccacugaguugugccuauucauugccaaggUUCUUGUGUCUUUUUGGGCAGGUGGcugggugcgcacaacccacagagauggggcagggcuauauggggauuuaugugcagaauuuaauaaccuu
....((((((.(((.(((..(((.(((.(((.(((((((((((.((((...(((((.....)).)))..)))).))))))...))))))))...))).)))..))).))).))))))........

Structure

----ccac      g   c   uc   g   --a   U     ---      U    CAG   -  u 
        ugaguu ugc uau  auu cca   ggU CUUGU   GUCUUU UGGG   GUG Gc g
        |||||| ||| |||  ||| |||   ||| |||||   |||||| ||||   ||| || g
        auuuaa acg gua  uag ggu   ucg ggacg   uagaga accc   cac cg g
uuccaaua      g   u   uu   g   aua   -     ggg      c    -aa   g  u 

Annotation confidence Not enough data

Genome context

chr1: 98817805-98817929 [-]

Mature eca-miR-9054

• Accession: MIMAT0034598
• Description: Equus caballus eca-miR-9054 mature miRNA
• Sequence: 31 - UUCUUGUGUCUUUUUGGGCAGGUGG - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545